Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq485 118 3e-24 >seq485 Length=38979 Score = 118 bits (130), Expect = 3e-24 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 13308 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 13249 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 13248 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 13190 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | |||| | | Sbjct 13189 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTATTAAACTAC 13130 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 13129 CAACTACCATAATC 13116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222329381952