Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1027 125 1e-26 seq2539 107 3e-21 >seq1027 Length=18264 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| ||||| | |||| || ||| Sbjct 12437 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 12494 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 12495 GCCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 12552 >seq2539 Length=3677 Score = 107 bits (118), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| |||||||| ||||| | |||| || ||| Sbjct 123 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 66 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| || ||| || || ||||||||||||||||||| ||||||||||||||||| Sbjct 65 GCCGCCAAATTACTATTTGTAGGATTATGGCTGAACGCCTTTAAGTCAGAATCCATGC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819154153728