Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq476 260 1e-64 seq4292 230 2e-55 >seq476 Length=26050 Score = 260 bits (288), Expect = 1e-64 Identities = 1093/1691 (65%), Gaps = 57/1691 (3%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || ||| || ||||| |||||||| | | | || Sbjct 4812 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG-TGAGCTT 4754 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 4753 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCAC 4695 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTA 65298 | || || || | || ||| | ||| | | | | | |||||||| || |||||||| Sbjct 4694 CGCGGTCGGCCGACAAGTCCAG--TACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTA 4637 Query 65299 CAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCA 65356 | | | | || | | || || ||| | | ||| || || || | | ||| || Sbjct 4636 CTT-CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCA 4578 Query 65357 ATAATGCGATTACGCATCGACTC-TGACCACAAACCCAAATCGATAAGATGTTGAACCAA 65415 | | |||| |||| || | || ||| | |||| || || || | | | || Sbjct 4577 GGA-TCTGATTGCGCA-CGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAG 4520 Query 65416 GTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || || ||| | || | | |||||| |||| ||| ||||| ||| || |||||||| Sbjct 4519 GT-AC--TTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGA 4463 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 |||| ||| || | ||| || |||||||||| || ||||| || || || || ||||| Sbjct 4462 CGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCAT 4403 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 ||| || |||| || ||||| || | |||| | | | ||| | | | | Sbjct 4402 GGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGC 4343 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||||||| | | | || | ||| |||||| || || | | | || Sbjct 4342 CCAGTTCCAGA--GACCCGAGGACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATCCC 4286 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | |||||||| || || |||| | ||||| || ||||||||||| | Sbjct 4285 CTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCAT 4226 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 | ||||||| ||||| | || || |||||||| ||| || || || || || Sbjct 4225 GGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGC 4166 Query 65773 CTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTC 65831 || ||||||||| ||| | || ||| |||| || | ||| || || || || || | Sbjct 4165 CTGCTCGCTCTCGAACG-CGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGC 4107 Query 65832 CAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAAT 65891 | || |||||||| || || |||| ||||| | |||||| | || |||||||| | Sbjct 4106 CGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGT 4047 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTT 65951 ||| ||||| | || | ||||| |||||||| | || | ||| | || Sbjct 4046 TGACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGA--CCTCGTAGAGTTT 3989 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 | || | | ||| | | ||| |||| |||||||| || || | Sbjct 3988 C----------TGGTA--GTCGAACACG----CCGTCGTCCACGAACTTGGGCAGCGCCA 3945 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || |||||||| || || | |||||| || | || ||||| | | ||| || Sbjct 3944 CGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGC 3885 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 |||| || ||| |||| |||||||| | ||||| || || |||||| ||| || | Sbjct 3884 ACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGT 3825 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||| | || ||| ||||| | || | || | ||||||| ||| | Sbjct 3824 CCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACA 3765 Query 66192 GAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 | | || || | || | | | | | | || | ||| ||||| | ||||||||| Sbjct 3764 GCTGCTGCGCGTTGATGGT-CTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGG 3706 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 || || || ||||| ||| | || | || || || || || | || Sbjct 3705 CTCTCAAACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAA 3646 Query 66311 GACCAATCACCATCCTGTTCTACACGACGC---ATAAATAGATCAGGTATCCAGAGGGCG 66367 ||| | || | || || |||| ||| || || || || || | ||| || ||| Sbjct 3645 CTCCACTTGCCGT--TGGCCTCCACG-CGCTTCATGAACAGGTCGGGCACCCACAGCGCG 3589 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| || ||||| || || ||| ||| ||||||| || ||||||| ||| |||||| Sbjct 3588 TAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAAC 3529 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || || | |||||| ||||| || || |||||||||||||| |||| | || |||||| Sbjct 3528 TCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCG 3469 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || ||||| ||||| || || | |||||| || |||| ||| || | || ||| Sbjct 3468 CCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCG 3409 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATT 66606 || || ||| ||||||||| ||| | | | | || || || || | ||| ||| Sbjct 3408 TTGGAGGAGCCGTTGGTGCCG-CGAATGTAGCTGTTGGTGGCACGAATGTTGTG--CATG 3352 Query 66607 CAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 | || || ||||| || ||| ||| |||||| || || | | || | Sbjct 3351 CTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAG 3292 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 || || || |||||||| ||| |||| || ||| |||| || || || || Sbjct 3291 ATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGC 3232 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || || |||| || || || || || |||||||| ||| | | | |||||| Sbjct 3231 GGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGC 3172 Query 66785 TTGTACGTCTC 66795 | ||||||||| Sbjct 3171 TCGTACGTCTC 3161 >seq4292 Length=2137 Score = 230 bits (254), Expect = 2e-55 Identities = 592/893 (66%), Gaps = 39/893 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 11 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 70 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 71 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 130 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||||||||| || || Sbjct 131 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCGTTCTTCGCTGC 183 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||||||| || || ||||| | || |||| ||| | || ||||| | Sbjct 184 GAGCGACGGTATTGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGG 239 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || | |||| || || ||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 240 TGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGG 299 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 ||||| | ||||| ||||||||||||| ||| | ||| || | || | Sbjct 300 TGTACTCGCTGCTCATTGATACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGC 359 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC- 61461 |||||||||||||| ||| |||||| ||||||| | ||||| |||| ||| | Sbjct 360 GCGCCATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 419 Query 61462 ACC--AGTACAACGGC-TACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 ||| || || | ||| || || ||||||| || || | || ||||| Sbjct 420 ACCCGCGTGTGTCGTCGTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGC 475 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || ||| || || || | | ||||| ||| | ||||| || || || ||||| Sbjct 476 ATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCT 535 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 || |||| |||| || ||| |||| || |||||||| ||||| || || || Sbjct 536 GGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCGCG 595 Query 61638 TG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 || | || || || | | |||||||| | | ||||| || ||| ||| Sbjct 596 TGCCTCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAG 649 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 ||||| || || ||||| ||||| || || || || ||| | | || || Sbjct 650 ATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAG 709 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 || ||||||||||| | | || |||| ||||| || || || || |||||||||||| Sbjct 710 CTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTG 769 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 || | ||||| || |||||| || ||| ||||| || || | |||||| Sbjct 770 CTGTACTCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGAC 829 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || || |||||||| || || ||||| || Sbjct 830 ATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540008355280