Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq362 98.7 4e-15 seq93 86.0 3e-11 seq351 84.2 9e-11 >seq362 Length=31691 Score = 98.7 bits (108), Expect = 4e-15 Identities = 170/244 (70%), Gaps = 15/244 (6%) Strand=Plus/Plus Query 222464 CCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGA 222523 ||||| | ||||| ||||| ||| | |||||||||||||| | | | | || | Sbjct 26287 CCATCCTGCACCGAGACCTGAAGAGCCCCAACCTGCTCGTGGACAAGAACTTCAACATCA 26346 Query 222524 AGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG- 222579 || || | || || || | |||||| | |||| || ||| |||||||| || Sbjct 26347 AGTTGTCGGATTTCGGACTAGCGCGGGTGAAGG---CCCACGTGCAGACCATGACGGGGA 26403 Query 222580 --TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCG 222634 ||||| ||| | | |||| ||| |||||| || | || ||| || ||||| | Sbjct 26404 ACTGCGGGACGGTGCAGTGGATGGCGCCCGAGGTCTTGGGCAACCAGAAG---TACACGG 26460 Query 222635 AGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTC 222694 ||||||||||||| | ||||||||| || |||| |||||| || |||||||| || | | Sbjct 26461 AGAAGGCCGACGTGTTCTCGTTCGGAATTGTCATTTGGGAGATCGTCACGGGCGAGTGCC 26520 Query 222695 CCTA 222698 | || Sbjct 26521 CGTA 26524 >seq93 Length=65012 Score = 86.0 bits (94), Expect = 3e-11 Identities = 153/217 (71%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||||||||||||||| | ||| ||| ||| ||||| || ||||| || | | |||| Sbjct 10920 ATCATCCACCGCGACTTGAAGCCCAAGAACGTGCTCCTGAGCGACACCTGGGAGGCGAAG 10861 Query 222526 GTGGCCGACTTTGGGTTCG--CGCG-GATCAAGGAA-ACCAACGCCACCATGACA-CGGT 222580 | | |||||||| || |||| | | | ||| |||| || ||||| ||| Sbjct 10860 CTCACGGACTTTGGAATCAGTCGCGAGCTGGATGAAGACCAG----ACTATGACTGCGGA 10805 Query 222581 G--CGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAA 222638 | ||||||| || ||||| || |||||| | | |||| |||| ||||||| Sbjct 10804 GATCGGCACGGTGTCCTGGATCGCCCCCGAGGTTCTGCGTGGCGAGCACTACTCCGAGAA 10745 Query 222639 GGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAG 222675 ||||||||| |||||||||||| |||| ||| |||| Sbjct 10744 GGCCGACGTGTACTCGTTCGGCGTCATTATGACGGAG 10708 >seq351 Length=32361 Score = 84.2 bits (92), Expect = 9e-11 Identities = 89/113 (79%), Gaps = 7/113 (6%) Strand=Plus/Minus Query 222568 ACCATGACA--CGGTG-CGGCACGCCGTACTGGACGGCACCCGAGATCATCACC--CAAG 222622 |||||||| ||||| |||||| ||||||||||| || ||| | ||| |||| Sbjct 19936 ACCATGACGGCCGGTGTCGGCACCATCTACTGGACGGCCCCGGAGGTGCTCATGGGCAAG 19877 Query 222623 AGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAG 222675 | |||||||||||||||||| ||||||||||||||||| |||||| |||| Sbjct 19876 AAG--TACACCGAGAAGGCCGACATCTACTCGTTCGGCATCGTCATGTCGGAG 19826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084581128559046