Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq917 248 4e-63 >seq917 Length=15294 Score = 248 bits (274), Expect = 4e-63 Identities = 242/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 13181 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 13240 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| |||||||||||| || |||| |||| | || Sbjct 13241 AACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 13300 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| ||||| || |||| Sbjct 13301 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 13359 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 13360 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 13419 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 13420 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 13479 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 13480 TTGGGTATAGGGGCGA 13495 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 12633 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 12692 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 12693 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 12752 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 12753 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 12792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079865508500