Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq276 104 3e-20 >seq276 Length=39256 Score = 104 bits (114), Expect = 3e-20 Identities = 168/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 33784 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 33726 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| | | Sbjct 33725 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCT-------------ATTT 33679 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | | | || || || |||||||||||| | ||||||||||| |||||| Sbjct 33678 ATTTTAATAA-ATAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 33620 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| || Sbjct 33619 CAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGGG 33560 Query 247 TA 248 || Sbjct 33559 TA 33558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694357821710