Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq276 134 5e-29 >seq276 Length=39256 Score = 134 bits (148), Expect = 5e-29 Identities = 354/532 (67%), Gaps = 20/532 (4%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | ||||||||| || |||||||||| Sbjct 33006 ATTCGGAGTTTCCAAGAATTCAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 32947 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 32946 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 32888 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 32887 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 32828 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 32827 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 32768 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 | |||||||||| | | ||| | | | | | || ||| | ||| ||||| ||| Sbjct 32767 GTTTCGGGTCTTATTTTTATAACTAAAAAG-CTTTTTAAAACTTGATTTATCTACGCCTA 32709 Query 356 CCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCA 415 | | | |||| ||||| | | || ||||| || ||| |||| | ||||||| | Sbjct 32708 CTTTA-AAAAATTAAGCTCGCTATA-AAAATAAACTTGCTGGCCCATTATGCAAAAGGTA 32651 Query 416 CGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTC 475 | | || || | || |||| || ||| | |||| | || ||||| Sbjct 32650 CACTGTTACTTTTTA--TAAA---------AGTTCCAATTGATTATTAACATTAAGTTTC 32602 Query 476 AGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 | | | ||||||| | | | | | ||||||||||||| | || |||||||| | Sbjct 32601 A-GAATTATTTCA---AACTCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCA 32546 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||||| ||| || | | | |||| || ||||||| || | | ||||| Sbjct 32545 CTATCGATCATTAATTA-TTTATAGGTTTTGAGGGTGGTTCCCCAATATTCA 32495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817486036480