Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq276 122 2e-25 >seq276 Length=39256 Score = 122 bits (134), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 204 TTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGA 263 ||||||| ||||| || |||||| | || |||||| | ||||| || ||| || Sbjct 33252 TTGCCAC---TTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGA 33196 Query 264 CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 ||| ||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||| Sbjct 33195 CCAATGAGCTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGT 33136 Query 324 CTACGCAACTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GAT 381 | | || |||||| |||| || | | |||| | ||||||| ||| || Sbjct 33135 AATCATTTTTTTACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAAT 33077 Query 382 CTGGGCTGTTTCCCTCT 398 ||||||||||||||||| Sbjct 33076 CTGGGCTGTTTCCCTCT 33060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177526164480