Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq276 167 6e-39 >seq276 Length=39256 Score = 167 bits (184), Expect = 6e-39 Identities = 249/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 37699 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 37757 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | |||||||||||| ||||||||||| |||||| | Sbjct 37758 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 37817 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| ||||| || |||| | Sbjct 37818 GAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTAATAAACTGGAGTATAAAT 37877 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | Sbjct 37878 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCTA 37937 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 37938 TGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 37996 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || |||||||| |||| ||||||||| || ||||||||||| | ||| Sbjct 37997 ACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 38043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203124559360