Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq276 179 1e-42 >seq276 Length=39256 Score = 179 bits (198), Expect = 1e-42 Identities = 339/494 (69%), Gaps = 41/494 (8%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 34207 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 34149 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 ||||||| || | || |||| ||| | | | |||||||| Sbjct 34148 TACACTGTCT---------ATTTTTTA--AATATTAGTTATTTATTTTAATAAGAGTGGT 34100 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTC---TCCCACCTAT 251 ||||||| || || | || |||||||| ||| || | | |||| ||| Sbjct 34099 ATTTCAAGAATATCTAAATAATTTACTAGCGTAAAG--ATC-TAAACAATTACCACTTAT 34043 Query 252 CCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTT 310 ||||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| Sbjct 34042 ACTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTC 33983 Query 311 CGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| | | ||| | ||||||| || || | ||| ||||| | | || | | Sbjct 33982 CGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATT 33924 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 33923 GGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAAT 33864 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 33863 TTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT------ 33810 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 | || || || |||| |||| |||||||||||||||||| ||| Sbjct 33809 -------------TAATGCGCAAACATTTCCTTTTAATCTTCCAGCACCGGGCAGGTGTC 33763 Query 550 AGTCCGTATACCTC 563 || || ||||| || Sbjct 33762 AGACCCTATACATC 33749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702293259520