Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq498 251 6e-62 seq374 239 4e-58 seq5612 170 2e-37 >seq498 Length=26695 Score = 251 bits (278), Expect = 6e-62 Identities = 1091/1691 (65%), Gaps = 57/1691 (3%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || ||| || ||||| |||||||| | | | || Sbjct 5501 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG-TGAGCTT 5443 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 5442 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCAC 5384 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTA 65298 | || || || | || ||| | ||| | | | | | |||||||| || |||||||| Sbjct 5383 CGCGGTCGGCCGACAAGTCCAG--TACTGCCTTCTGCTTGATCTCCCACACCGTCTTGTA 5326 Query 65299 CAGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCA 65356 | | | | || | | || || ||| | | ||| || || || | | ||| || Sbjct 5325 CTT-CTCCTTGACGTGATCGGGGATGGCCTTCACCTTCTGCACGGAGCCGCCGTCGTTCA 5267 Query 65357 ATAATGCGATTACGCATCGACTC-TGACCACAAACCCAAATCGATAAGATGTTGAACCAA 65415 | | |||| |||| || | || ||| | |||| || || || | | | || Sbjct 5266 GGA-TCTGATTGCGCA-CGTCGGGTGTCCAGATGCCCAGCTCAATGAGCTCCTTCATCAG 5209 Query 65416 GTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || || ||| | || | | |||||| |||| ||| ||||| ||| || |||||||| Sbjct 5208 GT-AC--TTGTTCACGATCGTGAACTCACCGGCCAGCACACGGCGGTTGTACATGTTGGA 5152 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 |||| ||| || | ||| || |||||||||| || ||||| || || || || ||||| Sbjct 5151 CGTGTAGGGCTCGATGGACTCGTTGTTGCCTAGGATCTGGGCCGTGGAAGCCGTGGGCAT 5092 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 ||| || |||| || ||||| || | |||| | | | ||| | | | | Sbjct 5091 GGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGTTTGACCACGTTCTCCTTGAGCGCCGC 5032 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||||||| | | | || | ||| |||||| || || | | | || Sbjct 5031 CCAGTTCCAGA--GACCCGAGGACGGGGTG-ACGCCCCACATGTCGAACTGGAAGATCCC 4975 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | |||||||| || || |||| | ||||| || ||||||||||| | Sbjct 4974 CTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTAGGGGCCGAGCTCCTTGGCAATCTCCAT 4915 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 | ||||||| ||||| | || || |||||||| ||| || || || || || Sbjct 4914 GGACGTCTCGACGGCGGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGC 4855 Query 65773 CTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTC 65831 || ||||||||| ||| | || ||| |||| || | ||| || || || || || | Sbjct 4854 CTGCTCGCTCTCGAACG-CGTAGTTCATGAGGATGAAGGCGTCCGCGAGGCCCTGGACGC 4796 Query 65832 CAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAAT 65891 | || |||||||| || || |||| ||||| | |||||| | || || ||||| | Sbjct 4795 CGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGATAGTAGT 4736 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTT 65951 | | ||||| | || | ||||| |||||||| | || | ||| | || Sbjct 4735 TAACGTCGATGACCTTGTTGAGGTTGCGGGTCACCACCTTGGTGA--CCTCGTAGAGTTT 4678 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 | || | | ||| | | ||| |||| |||||||| || || | Sbjct 4677 C----------TGGTA--GTCGAACACG----CCGTCGTCCACGAACTTGGGCAGCGCCA 4634 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || |||||||| || || | |||||| || | || ||||| | | ||| || Sbjct 4633 CGGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGC 4574 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 |||| || ||| |||| |||||||| | ||||| || || |||||| ||| || | Sbjct 4573 ACAGGTTGCTGGAGCGGATGGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGT 4514 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||| | || ||| ||||| | || | || | ||||||| ||| | Sbjct 4513 CCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACA 4454 Query 66192 GAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 | | || || | || | | | | | | || | ||| ||||| | ||||||||| Sbjct 4453 GCTGCTGCGCGTTGATGGT-CTTGCGGGCGCGGCCCTCGCGCTCGTACTTGTCGTAGAGG 4395 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 || || || ||||| ||| | || | || || || || || | || Sbjct 4394 CTCTCAAACTCGTCCCCCCAGCACTCGTAGAGCCCGGGGGCCTCGTTGGGGCAGAACAAA 4335 Query 66311 GACCAATCACCATCCTGTTCTACACGACGC---ATAAATAGATCAGGTATCCAGAGGGCG 66367 ||| | || | || || |||| ||| || || || || || | ||| || ||| Sbjct 4334 CTCCACTTGCCGT--TGGCCTCCACG-CGCTTCATGAACAGGTCGGGCACCCACAGCGCG 4278 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| || ||||| || || ||| ||| ||||||| || ||||||| ||| |||||| Sbjct 4277 TAGAACAGGTCGCGGGCACGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAAC 4218 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || || | |||||| ||||| || || |||||||||||||| |||| | || |||||| Sbjct 4217 TCGAACACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCGAAGCTGCCCTTGCGCTTGCCG 4158 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || ||||| ||||| || || | |||||| || |||| ||| || | || ||| Sbjct 4157 CCGCCCTGGTCCACGTACCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCG 4098 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATT 66606 || || ||| |||||||| |||| | | | | || || || || | ||| ||| Sbjct 4097 TTGGAGGAGCCGTTGGTGCC-TCGAATGTAGCTGTTGGTGGCGCGAATGTTGTG--CATG 4041 Query 66607 CAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 | || || ||||| || ||| ||| |||||| || || | | || | Sbjct 4040 CTGATGCCGATACCCCCCGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAG 3981 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 || || || |||||||| ||| |||| || ||| |||| || || || || Sbjct 3980 ATACCCTCGATGGAGTCGTCCTGCATGGCCAATAGGAAGCAGGAGGACAGCTGCGGACGC 3921 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || || |||| || || || || || |||||||| ||| | | | |||||| Sbjct 3920 GGCGTTCCGGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGC 3861 Query 66785 TTGTACGTCTC 66795 | ||||||||| Sbjct 3860 TCGTACGTCTC 3850 >seq374 Length=32324 Score = 239 bits (264), Expect = 4e-58 Identities = 594/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| ||||| || Sbjct 2193 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 2134 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 2133 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 2074 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||||||||| || || Sbjct 2073 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCGTTCTTCGCTGC 2021 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||||||| || || ||||| | || |||| ||| | || ||||| | Sbjct 2020 GAGCGACGGTATTGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGG 1965 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || ||||||| || || ||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 1964 TGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGG 1905 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 ||||| | || ||||| |||||||||| ||| | ||| || | || | Sbjct 1904 TGTACTCGCTGCTGATCGACACGTACATCAAGGACGCCGTGGAGAAGGACCACCTGCTGC 1845 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC- 61461 || ||||||||||| ||| |||||| ||||||| | ||||| |||| ||| | Sbjct 1844 GCGCGATCGAGACGATCCCGTGCGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 1785 Query 61462 ACC--AGTACAACGGC-TACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 ||| || || | ||| || || ||||||| || || | || ||||| Sbjct 1784 ACCCGCGTGTGTCGTCGTAC----CCGGAGCGTCTGCTGGCGTTCGCCGCCGTGGAGGGC 1729 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || ||| || || || | | ||||| ||| | ||||| || || || ||||| Sbjct 1728 ATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCT 1669 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC- 61637 || |||| |||| || ||| |||| || |||||||| ||||| || || || Sbjct 1668 GGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCGCG 1609 Query 61638 TG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 || | || || || | | |||||||| | | ||||| || ||| ||| Sbjct 1608 TGCCTCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAG 1555 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 ||||| || || ||||| ||||| || || || || ||| | | || || Sbjct 1554 ATTGTGCGCGACGCGGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTGGAG 1495 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 || ||||||||||| | | || |||| ||||| || || || || |||||||||||| Sbjct 1494 CTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTG 1435 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 ||| | ||||| || |||||| || ||| ||||| || || | |||||| Sbjct 1434 TTGTACTCGCTGGGTGTGCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGAC 1375 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || || |||||||| || || ||||| || Sbjct 1374 ATGATCTCTCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1322 >seq5612 Length=1235 Score = 170 bits (188), Expect = 2e-37 Identities = 580/891 (65%), Gaps = 36/891 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| |||||| ||| || | | || | |||| || ||||| ||| | || Sbjct 1160 CGGTTCGTGCTGTTCCTGATCCAGGAGCACGACGTGTGGCAGAT-TACAAGAAGACCGAG 1102 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG----- 61168 || || |||||||||| |||||| | || | | ||| | || ||||||| Sbjct 1101 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCAGGTGCACGACCTCAAGGACTGGGCCAAC 1042 Query 61169 -AG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || || | |||||||| ||||| || || ||| |||| ||||| ||||| Sbjct 1041 CAGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCCGC 989 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | || ||||| | Sbjct 988 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGG 933 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || | |||| || || ||||||||||||||||| ||||| ||||| ||||| | ||| Sbjct 932 TGCCCGAGGTCCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGG 873 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTC 61401 ||||| | ||||| ||||| ||||||| ||| | | | | |||| | || | Sbjct 872 TGTACTCGCTGCTCATTGATACCTACATCAAGGA-CACGATGGAGAAGAACCACCTGCTG 814 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 ||||||||||||||| ||| || ||| ||||||| | ||||| |||| ||| | Sbjct 813 CGTGCCATCGAGACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGC 754 Query 61462 -ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 ||| | | | | | | || || ||||||| || || | || ||||| | Sbjct 753 GACCCG-CGAGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCCGTGGAGGGCAT 695 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 |||||| || ||||| | | ||||| ||| | ||||| || || || ||||| || Sbjct 694 CTTTTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 635 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG 61639 ||||| |||| || ||| | || || ||||| || ||||| || || || || Sbjct 634 TCTGAGCTTCTCGAACGAGCTCATCAGCCGAGACGAAGGTATGCACACGGACTTCGCGTG 575 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 | || || || | | || || || | | | || || ||| ||||| Sbjct 574 CCTCATG-TACTCGA-----AGCTCGTCAACAAGCTGCCCGAAAGCCGCGTGCACGAGAT 521 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 || || || ||||| || || || || || || || | |||| || || Sbjct 520 CGTGCGCGACGCGGTGGTGATTGAGCACGAGTTCGTGTGCGATTCGCTGCCTGTGGAGCT 461 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 ||| |||||||| | | || |||| ||||| || || || || |||||||| ||| | Sbjct 460 CATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT 401 Query 61818 GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACAT 61877 | | |||| || |||||| || || ||||| || || | |||||||| Sbjct 400 GTACTCACTGGGCGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACAT 341 Query 61878 GATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||| |||||| | |||||||| || || || ||||| || || ||||| || Sbjct 340 GATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537619592800