Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq2839 84.2 5e-13 >seq2839 Length=3500 Score = 84.2 bits (92), Expect = 5e-13 Identities = 466/739 (63%), Gaps = 34/739 (5%) Strand=Plus/Plus Query 1013 CCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTC 1072 ||||| |||| | | |||||||||||| | | | | | | | |||||| ||||| Sbjct 1368 CCAAAGCGACTCCATGATCAAGCACGTGTAGTTTGATTTTGGATTTCCTAACCGAGTCTC 1427 Query 1073 GAAGAACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCC 1132 | | ||| |||||||| | |||| ||||| ||||| ||||| | || Sbjct 1428 CAGGTCGTCCCTGCTGAAGCA----------AAGCCTGGCAACGGCTACTACCTAGCACC 1477 Query 1133 ACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGATCATCACACCAAGTCAAAAACGAA 1192 |||| || || || ||||||||||| ||||| ||||| |||| |||| | ||| | || Sbjct 1478 ACGTCGTCGAGACCTACCTATCCAAGGATGGATAGATCACCACAACAAGACGAAAGCCAA 1537 Query 1193 AATCAACGAGGACTTCAAGCTGTATGAGTACGGCACTCTACCTGCTGACAAACCCAATAT 1252 |||| || | || |||| || || || | | ||| ||| | | Sbjct 1538 GATCATTGACAGCCTCTTTCTGTTCGAACTCGCAACCCCTCGTGCAGAC-ACTGCGGGGG 1596 Query 1253 CTCTGCTCA-AGTGACCAAGAGATCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCA 1311 | ||| | || | || || | || || ||| | | ||| | |||| | Sbjct 1597 CGTTGCCGACGGTTGCGAATCGAAACCAGGAAGAGAAGGAACGGAAAGTCAACGACAGTA 1656 Query 1312 TCAAGGAGATGCGAGGCATGATCGA------AGAAGGACGCGAAGAGGAAGCCTTCACCA 1365 || || ||| ||| ||| | || | || || || |||||| || | Sbjct 1657 TCGTCGAAATGAAAGGAATGCTTGAGGGGGGGGGGGGGCGTGAGAAGGAAGTGCTCGCTG 1716 Query 1366 AGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACAGCGTC 1425 || |||||| |||||||| | ||||| || || | || ||||| | | || | Sbjct 1717 AGGTTCCTCAAAACTACTCGCGATATGGTGAGAAAGTCAAGACTATGGTGTTGCA--ATA 1774 Query 1426 GTG--ACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGGTTC 1483 ||| | || ||||| |||||| || | | |||| || || | |||| ||| | Sbjct 1775 GTGAAAATTCATCAAGGCCAACGGACACGCACCCATCGGGACTATGGACACTCTTGGATA 1834 Query 1484 TGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGACAA 1543 || |||||||| ||| | | | || || | || |||| |||| | ||| ||| Sbjct 1835 TGACAAGTCTGTCATTCTACGG------TAACCAACCTACTACAGCAAGGACCTGAACAG 1888 Query 1544 CCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGA 1603 || ||||| | | || | ||| | |||||||||| |||| ||| || | || Sbjct 1889 TCGCTTCTTTGGACTATAGGATGAAAATGCACACACGCACACACTTCACCAACATCTAGA 1948 Query 1604 TCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGCTGG 1663 || | ||||| ||| | ||||| | |||| | ||||| || ||||| || ||||| Sbjct 1949 CCATGTGGTAGTTGAGAAGCTCGGAGTGCTGTTCTTCAAGACGATTTGTGATGAGGCTGG 2008 Query 1664 TTTCCCAGTTGACCAAAAGTACAAGACGCCGCAAC---TGGCTCGTACCACTGTCTTGGT 1720 ||||| ||| ||| || |||||| || | || | | ||| | || ||||| |||| Sbjct 2009 GTTCCCCATTGGCCAGAAATACAAG-CGTC-CACCGTTTAGCT-GAACAACTGTACTGGT 2065 Query 1721 CTCTTCCAACTTCACCATC 1739 || || |||||| ||||| Sbjct 2066 TTCCTCGAACTTCTCCATC 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896784084900