Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314505.1_202015-10- 14] 6,270 sequences; 53,969,337 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq403 93.3 2e-13 >seq403 Length=30921 Score = 93.3 bits (102), Expect = 2e-13 Identities = 169/244 (69%), Gaps = 15/244 (6%) Strand=Plus/Minus Query 222464 CCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGA 222523 ||||| | ||||| ||||| ||| | |||||||||||||| | | | | || | Sbjct 5329 CCATCCTGCACCGAGACCTGAAGAGCCCCAACCTGCTCGTGGACAAGAACTTCAACATCA 5270 Query 222524 AGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG- 222579 || || | || || || | || ||| | |||| || ||| |||||||| || Sbjct 5269 AGTTGTCGGATTTCGGACTGGCACGGGTGAAGG---CCCACGTGCAGACCATGACGGGGA 5213 Query 222580 --TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCG 222634 ||||| ||| | | |||| ||| |||||| || | || ||| || ||||| | Sbjct 5212 ACTGCGGGACGGTGCAGTGGATGGCGCCCGAGGTCTTGGGCAACCAGAAG---TACACGG 5156 Query 222635 AGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTC 222694 ||||||||||||| | ||||||||| || |||| |||||| || |||||||| || | | Sbjct 5155 AGAAGGCCGACGTGTTCTCGTTCGGAATTGTCATTTGGGAGATCGTCACGGGCGAGTGCC 5096 Query 222695 CCTA 222698 | || Sbjct 5095 CGTA 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084567638993460