Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq618 228 3e-57 seq15365 181 4e-43 seq8804 161 4e-37 seq9255 107 8e-21 >seq618 Length=308 Score = 228 bits (252), Expect = 3e-57 Identities = 223/284 (79%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 14 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 73 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC----GTGAGGGTGCACCATC 519 |||||| ||| || || ||| | || |||| ||| | | ||||||||| || Sbjct 74 AACCCGAAGGCGCAAGTAACCTGA---GTGGCGGGATCCCCCTCGCG-GGGTGCACCGTC 129 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||| | |||| | | || || || |||| ||||||| |||| |||||||||||| Sbjct 130 GACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAG 189 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||| Sbjct 190 ATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGCAGCG 249 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 250 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 293 >seq15365 Length=1869 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 1120 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 1179 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 1180 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 1239 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 1240 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 1279 Score = 102 bits (112), Expect = 3e-19 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CA 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 1668 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 1727 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG 491 ||||| ||||| |||||||||||| || Sbjct 1728 AACCCAAGCGCGAAATGAAAGTGAAGGG 1755 >seq8804 Length=8658 Score = 161 bits (178), Expect = 4e-37 Identities = 110/124 (89%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 |||||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||| Sbjct 6512 GATTTGAGCTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGG 6571 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||| ||||||||||||||| ||||| |||| ||||| ||||||||| ||||||| Sbjct 6572 TGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATTGATCGTC 6631 Query 664 AAAT 667 |||| Sbjct 6632 AAAT 6635 >seq9255 Length=1686 Score = 107 bits (118), Expect = 8e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 96 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 37 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 ||||||| ||| |||||||||||||| ||||||| Sbjct 36 TAAATATGGGCGAGAGACCGATAGCGAACAAGTA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079581017150