Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq13414 125 2e-26 seq7556 77.0 7e-12 >seq13414 Length=454 Score = 125 bits (138), Expect = 2e-26 Identities = 148/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||| ||| |||| |||||||| |||| ||| |||||||||| |||||| Sbjct 370 CCTTCTT-CACTCACTCGGTATTG-CTGGATCAAGCTTCCGCTCATTGTCCAAAATTCCC 313 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||||||||||| | ||| ||| |||||||||||| ||| |||| |||||||| || Sbjct 312 CACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCT 254 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCC 195 ||| ||||| || ||| | | |||||| | |||| |||||||| | ||||| Sbjct 253 TTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCT 194 Query 196 GACCTAGGCTCATCT 210 || | ||||||| Sbjct 193 TACGCAAACTCATCT 179 >seq7556 Length=2091 Score = 77.0 bits (84), Expect = 7e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 43 TGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 ||||||| |||||||| |||||||||| ||||||||||||||||| | ||| ||| Sbjct 1088 TGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGG 1146 Query 103 ACCGTGTCTCAGTTCCA 119 |||||||||||| ||| Sbjct 1147 GCCGTGTCTCAGTCCCA 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071790606240