Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14049 286 3e-72 seq14048 286 3e-72 seq18936 215 4e-51 >seq14049 Length=3113 Score = 286 bits (316), Expect = 3e-72 Identities = 896/1372 (65%), Gaps = 43/1372 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| ||| ||||| ||| || ||||||||||||| || |||| ||| || Sbjct 2223 GAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAATGGACTC 2164 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| ||||| ||||| || || ||||| ||||| ||||| || | || ||||| Sbjct 2163 GTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCAGCGAGTT 2104 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 |||| |||| | | | || | | | | |||||| ||| | || Sbjct 2103 GCGCAGGCCGTGCTTGATCACATTCTCCTTGAGTGCAGCCCAGTCCCAAA--GGCCAGAA 2046 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || || ||| |||||| || || | | | || | || || || || || | Sbjct 2045 GACGGAGTC-ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTG 1987 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG--GTCTCGAGTGCGGCA 65731 ||| | |||||| ||| ||||||||| | || || || ||||| | | || Sbjct 1986 GAACGTCTCGTACGGGCCCAGCTCCTTGGCGATTTC-CAT-TGACGTCTCCATCGAAGCG 1929 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | || || |||||||||||| ||||||||||| |||| |||||||| | | | Sbjct 1928 TAGTAGATCGTCTCGAAAATGTTCTTGTTAAGTTCACGGGCCTGCTCGCTCTCAAATG-C 1870 Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || ||| |||| ||| | ||| || ||||| || || ||||| || | ||||| || Sbjct 1869 GTAGTTCATGAGGATAAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACCGGACGGTG 1810 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 ||||| ||||| | |||||| | || |||||||| |||| || || | || Sbjct 1809 ACGCATGTTGGACTTGCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATGACCTTGTT 1750 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTA 65968 || || || || ||||| | | || ||| || || | | | ||| | Sbjct 1749 CAGGTTACGAGTGACCACCTTG--GTCACCTCGTACAGTTTCTGGTA--------GTTGA 1700 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 ||| || | |||| |||||||| ||||| | ||| || |||||||| Sbjct 1699 ACACG----------CCATCCTCCACGAACTTGGGCAGGGCCACAGAGGCCAGGTTGCAC 1650 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | |||||| || | || ||||| | | || ||||| || || |||| Sbjct 1649 ACCGCCACCTCGTCTGGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGG 1590 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || ||||| | ||||| || || |||||| ||| || |||||||| | |||| || Sbjct 1589 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAC 1530 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || ||| ||||||| || | || | ||||||| ||| || | || || | | Sbjct 1529 GGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATC 1470 Query 66209 GTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || | || || |||| ||||| | ||||| || |||||| || Sbjct 1469 GTCTTGCGGGCACGTCCCTCCTTC----TCGTACTTCTCGTACAGCGTTTCGAACTCCTC 1414 Query 66265 ACCCCAT-ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||||| |||| | | ||| ||| | || ||||| | || ||| | |||| Sbjct 1413 ACCCCAGCACTT-GTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCAT 1355 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 || || || ||| || || || || | ||| ||||||||||| | ||||| | Sbjct 1354 TGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCG 1295 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || ||| ||| | ||||| || || |||| || |||||||| || | |||||||| Sbjct 1294 CACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCAT 1235 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || |||| ||| ||||||||||| ||| | |||||||| || || ||||| || | Sbjct 1234 GCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACAT 1175 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 ||||||| | ||| || || | | ||| || | || ||| || || ||| |||| Sbjct 1174 AGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGG 1115 Query 66564 TGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 ||||| ||| | | | |||| || || |||| ||| | | | | |||||||| || Sbjct 1114 TGCCGCGGAT-GTAGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCCA 1056 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 ||| ||| |||||| || || | | || | | ||||| ||||||||||| Sbjct 1055 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCG 996 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 ||| |||| ||| | | |||| || || || || || || | || || Sbjct 995 TCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAAC 936 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794 || ||||| || |||||||| ||| | | | |||||| | |||||||| Sbjct 935 AGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCT 884 >seq14048 Length=3126 Score = 286 bits (316), Expect = 3e-72 Identities = 896/1372 (65%), Gaps = 43/1372 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||||| ||| ||||| ||| || ||||||||||||| || |||| ||| || Sbjct 2223 GAACTCGCCGGCCAGCACACGGCGGTTGTACATGTTGGACGTGAACGGCTCAATGGACTC 2164 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| ||||| ||||| || || ||||| ||||| ||||| || | || ||||| Sbjct 2163 GTTGTTGCCGAGAATCTGGGCCGTCGAAGCAGTGGGCATAGGAGCCACGAGCAGCGAGTT 2104 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 |||| |||| | | | || | | | | |||||| ||| | || Sbjct 2103 GCGCAGGCCGTGCTTGATCACATTCTCCTTGAGTGCAGCCCAGTCCCAAA--GGCCAGAA 2046 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 | || || ||| |||||| || || | | | || | || || || || || | Sbjct 2045 GACGGAGTC-ACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTTGCAGGCGAGCCCTG 1987 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG--GTCTCGAGTGCGGCA 65731 ||| | |||||| ||| ||||||||| | || || || ||||| | | || Sbjct 1986 GAACGTCTCGTACGGGCCCAGCTCCTTGGCGATTTC-CAT-TGACGTCTCCATCGAAGCG 1929 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | || || |||||||||||| ||||||||||| |||| |||||||| | | | Sbjct 1928 TAGTAGATCGTCTCGAAAATGTTCTTGTTAAGTTCACGGGCCTGCTCGCTCTCAAATG-C 1870 Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || ||| |||| ||| | ||| || ||||| || || ||||| || | ||||| || Sbjct 1869 GTAGTTCATGAGGATAAAGGCGTCAGCAAGACCCTGGACGCCAATGCCAACCGGACGGTG 1810 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 ||||| ||||| | |||||| | || |||||||| |||| || || | || Sbjct 1809 ACGCATGTTGGACTTGCGCGCCTCCGCGACCGGGTAGTAGTTGACGTCAATGACCTTGTT 1750 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTA 65968 || || || || ||||| | | || ||| || || | | | ||| | Sbjct 1749 CAGGTTACGAGTGACCACCTTG--GTCACCTCGTACAGTTTCTGGTA--------GTTGA 1700 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 ||| || | |||| |||||||| ||||| | ||| || |||||||| Sbjct 1699 ACACG----------CCATCCTCCACGAACTTGGGCAGGGCCACAGAGGCCAGGTTGCAC 1650 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | |||||| || | || ||||| | | || ||||| || || |||| Sbjct 1649 ACCGCCACCTCGTCTGGTGACGTGTACTCCATCACCTCACAGCACAAGTTGCTAGAGCGG 1590 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || ||||| | ||||| || || |||||| ||| || |||||||| | |||| || Sbjct 1589 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTAGAGCATGAAC 1530 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || ||| ||||||| || | || | ||||||| ||| || | || || | | Sbjct 1529 GGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATC 1470 Query 66209 GTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || | || || |||| ||||| | ||||| || |||||| || Sbjct 1469 GTCTTGCGGGCACGTCCCTCCTTC----TCGTACTTCTCGTACAGCGTTTCGAACTCCTC 1414 Query 66265 ACCCCAT-ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||||| |||| | | ||| ||| | || ||||| | || ||| | |||| Sbjct 1413 ACCCCAGCACTT-GTAGAGATCAGGAGCTTCGTTCGGACAGAACAAACTCCACTTGCCAT 1355 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 || || || ||| || || || || | ||| ||||||||||| | ||||| | Sbjct 1354 TGGCCTCGACGCGCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAACAAGTCGCGCG 1295 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || ||| ||| | ||||| || || |||| || |||||||| || | |||||||| Sbjct 1294 CACGGTGCAGCTCGTTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCAT 1235 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || |||| ||| ||||||||||| ||| | |||||||| || || ||||| || | Sbjct 1234 GCCACGGCTCCAAGTAAATGGCGAACGATCCCTTGCGTTTGCCTCCTCCCTGGTCCACAT 1175 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 ||||||| | ||| || || | | ||| || | || ||| || || ||| |||| Sbjct 1174 AGCGAGCCGTGTCGTTAAACACTCTGAGCATGGGGATGATCCCATTGGAGGAGCCGTTGG 1115 Query 66564 TGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 ||||| ||| | | | |||| || || |||| ||| | | | | |||||||| || Sbjct 1114 TGCCGCGGAT-GTAGCTGTTCGTGGCACGAATATTGTGCATACTGATGCCAATACCTCCA 1056 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 ||| ||| |||||| || || | | || | | ||||| ||||||||||| Sbjct 1055 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCG 996 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 ||| |||| ||| | | |||| || || || || || || | || || Sbjct 995 TCCTGCATGGCCAGCAAGAAGCACGACGACAGCTGCGGGCGCGGCGTTCCTGCATTAAAC 936 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCT 66794 || ||||| || |||||||| ||| | | | |||||| | |||||||| Sbjct 935 AGCGTGGGCGTCGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCT 884 >seq18936 Length=24579 Score = 215 bits (238), Expect = 4e-51 Identities = 499/742 (67%), Gaps = 25/742 (3%) Strand=Plus/Plus Query 61198 ATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT---A 61254 || || || ||| ||||||||||||| || ||||| ||||| || ||||| | | Sbjct 20553 ATCAAGCACGTGCTGGCGTTCTTTGCTGCCAGTGACGGCATCGTGAACGAGAACCTGGCA 20612 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 || ||| ||| | |||||||| ||| |||| || || || ||||||||||||||| Sbjct 20613 ATG-AAC--TTCAGCAACGAGGTGCAGGTGCCGGAAGCTCGCTGCTTCTACGGCTTCCAG 20669 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 || ||||| ||||| |||||||||| |||| | || ||||| |||||||||| | Sbjct 20670 ATCGCCATCGAGAACATCCACTCGGAAGTGTATTCGCTGCTGATCGACACGTACATCAAG 20729 Query 61375 GAGCGGGCGGAACGTGAACGATTGTTCAATGC----CATCGAGACGATACCGGCGGTGAA 61430 || | ||| ||| |||| || ||| |||||||||||| ||| ||| | Sbjct 20730 GATGCAGTGGA----GAAGGATTATTTGCTGCGAGCCATCGAGACGATCCCGTGCGTGGA 20785 Query 61431 GCGGAAAGCGGATTGGGC-CTTCAATTGGATCACCA--GTACAACGGC-TACATTTGGTG 61486 | ||| || ||||| |||| | | ||| || || | ||| | | Sbjct 20786 GAAGAAGGCTCGCTGGGCTCTTCGGTGGTGCGACCCTCGTGTGTCGTCGTACCCT----G 20841 Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 | || ||||||| || || | ||| ||||| | || ||| || ||||| | | | Sbjct 20842 AGCGTCTGCTGGCGTTCGCCGCGGTAGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCTA 20901 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||| ||| | ||||| || || || ||||| || |||| |||| || || | || Sbjct 20902 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGAGCTTCTCGAACGAACTCATCA 20961 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGA 61666 || || ||||||||||| || || || |||| | | || | ||||||| Sbjct 20962 GTCGTGATGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACT--CGA-AGCTGGTGA 21018 Query 61667 ATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | | | ||||| || ||| ||||| || ||||| || || | ||||| || | Sbjct 21019 ACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGTGACGCCGTGGCGATCGAGCACG 21078 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 | || || ||| | ||||||| |||||||||||||||| | || |||| | Sbjct 21079 AGTTCGTGCGCGACTCGCTGCCCGTGGAGCTCATCGGCATGAATTCGGCGCTCATGTGCC 21138 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATA 61846 |||| || || || || |||||||| ||| || | ||||| || |||||| | Sbjct 21139 AGTACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACA 21198 Query 61847 ATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTT 61906 | ||| ||||| || || | ||||||||||| ||| || | |||||||| || |||| Sbjct 21199 ACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCGATGCAGGGCAAGACCAACTTTT 21258 Query 61907 TCGAGAAACGTGTAGGCGACTA 61928 ||||||| ||||| ||||| || Sbjct 21259 TCGAGAAGCGTGTGGGCGAGTA 21280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397473355583120