Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cryptogea_20[genbank_20GCA_5F000468175.2_202016-07- 21] 19,533 sequences; 63,839,274 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq14478 109 8e-19 seq17908 87.8 2e-12 >seq14478 Length=42315 Score = 109 bits (120), Expect = 8e-19 Identities = 254/383 (66%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||| ||| || || ||| | || || ||| || | ||||| ||| | ||| Sbjct 811 TCTACCAGGCGTCGACGAGCGAGTTGTACGGTAAAGTGCAAGCCACACCGCAGGATGAAG 752 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 ||||||| | | ||||| || |||||||| || || || | | || |||||||| | Sbjct 751 ACACTCCATTCCACCCACGCTCACCTTATGGGGTGGCCAAGCAGTTTGCGTTCTGGAGCG 692 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 | |||| || | || ||| | || | || | ||| ||||| ||||| |||| Sbjct 691 TTGTAAACCACCGAGAGGCCTACGGGATGTACGCGGTGAACGGAATTCTGTTCAACCACG 632 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAA 162694 | || |||| ||||| || ||||| || || |||||| || || || || | Sbjct 631 AGAGTCCACGGCGAGGACCAACCTTCGTGACCCGGAAGATCACGCGTGCGGTGGTGCGGA 572 Query 162695 TTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGG 162754 || ||| || | |||| || |||| || ||| ||||| |||||||||| Sbjct 571 TTCGTGCAGGCATTGAAAGGTGCCTCTTTGTTGGCAATCTCGATGCCAAGCGTGACTGGG 512 Query 162755 GACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATG 162814 | ||||| ||||| || ||| |||||| |||||| ||||| || | ||||| | Sbjct 511 GCCACGCACGCGACTATGTGGAGTGCATGTGGCGGATGCTGCAGCACGACACACCAGAGG 452 Query 162815 ATTATGTGATCGCAACTGGTGAG 162837 ||| ||| | || || || ||| Sbjct 451 ATTTTGTTGTTGCTACGGGAGAG 429 >seq17908 Length=8227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 125801 GGAACCGAGCTAAACTACCTAGATGGCTCACTAACCGGAACCGCAGTTGCTTCCAAGGCA 125860 || || || || |||||||| ||||||||| || | ||||| | ||||||||| |||||| Sbjct 5588 GGTACTGAACTCAACTACCTTGATGGCTCATTACCGGGAACGGTAGTTGCTTCAAAGGCA 5529 Query 125861 GTTGTTCTAGATGCTAGCAAGGACAT 125886 |||||| | ||||||| |||||| || Sbjct 5528 GTTGTTGTGGATGCTAACAAGGATAT 5503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691290371593080