Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq919 167 4e-39 seq357 122 1e-25 seq699 87.8 3e-15 seq490 80.6 4e-13 >seq919 Length=62042 Score = 167 bits (184), Expect = 4e-39 Identities = 124/141 (88%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 89 CTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147 ||||||| | ||||||| |||| |||||||||| ||| | ||| ||||||| || | Sbjct 1446 CTATCCCTAGCACGATGCGCATTCACAAGATTACCCAGAC-TATCGATCAAGGTG-TATA 1389 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 CTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 1329 Query 208 CTGTTATTGCCTCAAACTTCC 228 ||||||||||||| ||||||| Sbjct 1328 CTGTTATTGCCTCCAACTTCC 1308 >seq357 Length=119206 Score = 122 bits (134), Expect = 1e-25 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 84067 ACTCGTTGAACGCATCAGTGTAGAGCGCGTGCGGGCCAGAACATCTAAGGGCATCACAGA 84008 Query 207 CCTGTTATTGCCTCAAACTTCC 228 ||||||||||| || ||||||| Sbjct 84007 CCTGTTATTGCATCCAACTTCC 83986 >seq699 Length=104952 Score = 87.8 bits (96), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||| || Sbjct 40938 CATCAGTGTAGTGCGCGTGCGGCTCAGAACGTTTAAGGGCATCACAGACCTGTTATTTCC 40879 Query 219 T 219 | Sbjct 40878 T 40878 >seq490 Length=115033 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||||||||||| |||| || ||| |||||| | | | |||||||||| ||||||||| || Sbjct 16949 GCAGGGACGTAATCAATGCAAGC-TGATGAGTTGGGTTTACTAGGAA-TTCCTCGTTCAA 16892 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||| | |||||||| |||||||| | ||| ||| Sbjct 16891 GACTGAAAATTGCAACATTCTATCCCTAGCACTATG 16856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751988227440