Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq20 217 4e-54 >seq20 Length=15621 Score = 217 bits (240), Expect = 4e-54 Identities = 208/268 (78%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 5123 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 5182 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5183 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 5242 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 |||||||||||||||||| ||| |||| || | || || ||| | Sbjct 5243 GAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGC---------GCAAACATTTCC 5293 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||| ||||| |||||||||||| |||| ||||||||| || || | || |||| Sbjct 5294 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 5353 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCA 280 ||| || ||||||| |||||||||||| Sbjct 5354 AGTCCTAAGTTTTTATTAAACAGTCGCA 5381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260779625472