Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq20 241 4e-61 >seq20 Length=15621 Score = 241 bits (266), Expect = 4e-61 Identities = 355/499 (71%), Gaps = 38/499 (8%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1204 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1145 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | Sbjct 1144 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATT 1096 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 1095 TAAAAATTT------------ATAAAAAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 1048 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | | Sbjct 1047 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGCTAATTT 988 Query 245 ATT--AAGTT-----GGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || || | ||||||| | ||| | |||||||||| Sbjct 987 ATTAAAAATTAATAAAAGTACTCTAACGAAAAAATTAATGATAGGTTAATGGAAGGTGGG 928 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || || Sbjct 927 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAA 869 Query 358 T-ACA---AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | ||| | |||| | | || | ||||||| | |||| | ||| |||| Sbjct 868 TCACAGTGAGAGGCAATAATAATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTT 810 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 809 CGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 750 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 749 ATGCTGCGGTGAATATGTT 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503975695360