Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1027 304 2e-80 seq852 224 2e-56 seq785 78.8 2e-12 >seq1027 Length=50045 Score = 304 bits (336), Expect = 2e-80 Identities = 212/240 (88%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 42881 GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAAT 42822 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | | | |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 42821 TGGCCAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGT 42762 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||| ||||||||||| |||||||||| ||||||||||| |||||| Sbjct 42761 CGCTATGAACGC-AGGCTACCACAAGCCAGATATCCCTGTGTTAACTTTTCTGACACCTC 42703 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||| | ||||| | | ||||||||||||||||| ||| |||||| | |||||||||| Sbjct 42702 TAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGTCACGCTTTCACGATTTGTATTCA 42643 >seq852 Length=213203 Score = 224 bits (248), Expect = 2e-56 Identities = 154/174 (89%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| | ||||| |||||||||||||| |||||||||| ||||||||| || |||||||| Sbjct 92637 ATTTTTCTTCGCAATGATAGGAAGAGCTGACATCGAAGAATCAAAAAGGAATGTCGCTAT 92578 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 92577 GGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 92518 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | | ||||||||||||||||| ||| |||||| |||||||||||| Sbjct 92517 AAAATTCTAAAGAACTAAAGGATCGATAGGTCACCCTTTCACGGTTTGTATTCA 92464 >seq785 Length=245047 Score = 78.8 bits (86), Expect = 2e-12 Identities = 61/74 (82%), Gaps = 9/74 (12%) Strand=Plus/Plus Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||||||||||| ||||||||||||||||||||| ||||||||||||| || Sbjct 70919 GGAAGAGCCGAC---------TCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCCCAC 70969 Query 200 GCCAGTTATCCCTG 213 ||||||||||| || Sbjct 70970 GCCAGTTATCCGTG 70983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854386192896