Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq20 118 2e-24 >seq20 Length=15621 Score = 118 bits (130), Expect = 2e-24 Identities = 142/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 5914 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 5973 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| Sbjct 5974 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATTATTT 6033 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | || | | ||||||| ||| |||||||||| Sbjct 6034 TTTCACTTCCTTTTTCACTTAGAATATTATTTTGAGACCTTAGC-GATCAATCTGGGCTG 6092 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 6093 TTTCCCTCT 6101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177580969984