Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq919 150 3e-34 seq357 120 6e-25 seq961 86.0 1e-14 seq699 84.2 4e-14 seq490 82.4 1e-13 >seq919 Length=62042 Score = 150 bits (166), Expect = 3e-34 Identities = 126/152 (83%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 92 CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGC 151 ||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 CTCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGC 1356 Query 152 CGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT 211 ||||||||||||||||||| |||||||| | ||||||| | || |||||||| Sbjct 1357 CGCACGCGCGCTACACTGATGCGTTCAACGAGTATA-CACCTTGATC-GATAGTCTGGGT 1414 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 |||||||| || ||||||| ||||||| Sbjct 1415 AATCTTGTGAATGCGCATCGTGCTAGGGATAG 1446 >seq357 Length=119206 Score = 120 bits (132), Expect = 6e-25 Identities = 102/125 (82%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| || | ||| || | ||||||| || ||||||||||||||| Sbjct 83952 CTTCTTAGAGGGACTTGAGGATAATCAAACCAAAGGAAGTTGGATGCAATAACAGGTCTG 84011 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||| |||||||||| ||||||||| |||||||| || Sbjct 84012 TGATGCCCTTAGATGTTCTGGCCCGCACGCGCTCTACACTGATGCGTTCAACGAGTACAC 84071 Query 189 CACCT 193 |||| Sbjct 84072 AACCT 84076 >seq961 Length=86516 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||||||||||| |||| || ||| ||| |||||||| |||||||| | | | Sbjct 72697 AGGTCTGGGTAATTTTGTGAATTCGCATCGAGCTAGGGATAGACTGTTGCAATTTTCGGT 72638 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||||| ||||||| ||| || ||||| || |||||||||||| Sbjct 72637 CTTGAACGAGGAATTTCTAGTAAACGCAAGTTGTCAGCTTGCATTGATTACGTCC 72583 >seq699 Length=104952 Score = 84.2 bits (92), Expect = 4e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||| |||||||||||||||||||||||| | |||||| ||||||||||| ||||||||| Sbjct 40878 AGGAAATAACAGGTCTGTGATGCCCTTAAACGTTCTGAGCCGCACGCGCACTACACTGA 40936 >seq490 Length=115033 Score = 82.4 bits (90), Expect = 1e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||||| |||||||| |||||||| | |||| |||||||||| |||||||| | | Sbjct 16860 GTGCTAGGGATAGAATGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACCCAA 16919 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||||||| || |||||||||||||||| Sbjct 16920 CTCATCAGCTTGCATTGATTACGTCCCTGC 16949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947184693248