Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 4e-17 >seq20 Length=15621 Score = 95.1 bits (104), Expect = 4e-17 Identities = 238/352 (68%), Gaps = 15/352 (4%) Strand=Plus/Minus Query 135 TGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTT 194 ||| |||| |||||||||||| |||||| || |||||||||| || ||||| ||||| Sbjct 6303 TGGTTAGGAGTGAAAGGCTAATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTG 6244 Query 195 AGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTG 254 | |||| || | | ||| | ||||||||||||| | ||||||||| | | Sbjct 6243 AAGTAGAGCATTTAAAATCTTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAA 6185 Query 255 CGACTTACCAAACCATTGCAAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGA 310 |||||| || ||| ||||||||||| | | | || |||| || | Sbjct 6184 AAACTTACTGAATTCTTGGAAACTCCGAATACAAAAAAACGTAATTTA----AATAGACA 6129 Query 311 GGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGC 369 | | || ||||||||| | | ||||| || | || || | ||| ||||||| Sbjct 6128 GACATTAGGCGCTAAGGTCTATTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGT 6070 Query 370 CCCGAAATGACA-GCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTT 428 | | |||| | | |||||| ||| || ||||| | | ||| | || | || Sbjct 6069 CTCAAAATAATATTCTAAGTGAAA--AAGGAAGTGAAAAAATAATTACAACCAGTAGGTA 6012 Query 429 GGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||||||||||| || |||||||| |||||| |||||| | ||| || Sbjct 6011 GGCTTGGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 5961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689572696064