Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq20 174 5e-41 >seq20 Length=15621 Score = 174 bits (192), Expect = 5e-41 Identities = 316/459 (69%), Gaps = 39/459 (8%) Strand=Plus/Plus Query 111 ACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTT 170 ||||||||||| |||||||| |||| ||||||| | |||| | | || Sbjct 4911 ACCGCCCCAGTCAAACTACCAACCATACACTGTCT---ATTTAGATAA-------ATATT 4960 Query 171 AGATATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACC-ACTAGCGT--- 226 || ||| | | | ||||||||||||||| | || |||| |||||||| Sbjct 4961 AGTTATTTATTTTAATAAGAGTGGTATTTCAAGGATATCTAAACAATTTACTAGCGTAAA 5020 Query 227 GGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCT 286 || | | ||| | | |||| ||| ||||||| | | || ||||| ||| | Sbjct 5021 GGTCTAA--ATAAT-TACCACTTATGCTACACATATTAGATAATATAACAATATAAAGAT 5077 Query 287 ATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGT 344 |||| ||||| | |||||||||| |||| | | ||| | ||||||| || | Sbjct 5078 GTAGTAAAGGTTCACGGGGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGAT 5136 Query 345 ACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCA 404 | | ||| ||||| | | || | | |||||||| ||| |||||||| |||||| |||| Sbjct 5137 AATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCA 5196 Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 |||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| Sbjct 5197 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCC 5256 Query 465 GTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTT 524 |||||||||| |||| ||| | || || || |||| || Sbjct 5257 GTTTACTGGGACTTCCATT-------------------TAATGCGCAAACATTTCCTTTT 5297 Query 525 AACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 || |||||||||||||||||| ||||| || ||||| || Sbjct 5298 AATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATC 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702372489216