Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq926 219 3e-52 seq1029 84.2 2e-11 >seq926 Length=67561 Score = 219 bits (242), Expect = 3e-52 Identities = 1103/1717 (64%), Gaps = 73/1717 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || ||| || ||||| |||||||| | | | || Sbjct 31988 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG-TGAGCTT 31930 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 31929 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCAC 31871 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 | || || || | || ||| | | || | || | |||||||| || ||||||||| Sbjct 31870 CGCGGTCGGCCGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 31812 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || ||| ||| | || ||| || || || | | ||| ||| Sbjct 31811 TT-CTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTCGTTCAA 31753 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 | | | || |||| | | ||| | || | ||||| || | | | || || Sbjct 31752 GA-TCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGT 31694 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| |||| | | |||||| || | ||| || || ||| || |||||||||| Sbjct 31693 -AC--TTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACG 31637 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || |||| || || || ||||| || || || || ||||||| Sbjct 31636 TGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGG 31577 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGT------TCATTTCAATGTTGTGACGCAATT 65588 | || |||| || ||||| || | ||||| ||| || ||| | || | Sbjct 31576 GGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCCTTGAG-CGTAG-- 31520 Query 65589 CGTCCCAGTTCCACATCGGTTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAG 65646 ||||||||||||| || |||| ||| |||||| || || | Sbjct 31519 ---CCCAGTTCCACATACC-----CGACGACGGGGTGACGCCCCACATGTCGAACTGGAA 31468 Query 65647 GGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAG 65706 | | || | || || || || || |||| | |||||| || |||||||| | Sbjct 31467 GATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGAT 31408 Query 65707 TTGACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTT 65765 | || | ||||| | ||||| || || ||||||||||| ||| || || | Sbjct 31407 CTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCT 31349 Query 65766 CACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCT 65824 | || |||| ||||||||| ||| | || ||| |||| ||| | ||| || || || Sbjct 31348 CCCGGGCCTTCTCGCTCTCGAACG-CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCC 31290 Query 65825 TGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGG 65884 || || |||||||||||||| || ||||||| ||||| | |||||| || ||| Sbjct 31289 TGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGG 31230 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGC 65944 ||||| |||| ||||| | || || ||||| || ||||| | | ||| | Sbjct 31229 TAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTC-------GTCAC 31177 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 ||| | ||| | | || | | | | || | |||| ||||| || Sbjct 31176 -----TTCATA--CAACTTCT---GGTAGTTGAAAACT-CCTTCCTCCACGAACTTAGGC 31128 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || | |||||| ||||| | |||||| || | || ||||| | | Sbjct 31127 AGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACC 31068 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||| | || ||| |||| || ||||| | |||| || || |||||| ||| Sbjct 31067 TCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTG 31008 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || |||||||||| ||| | || || ||||||| |||| || | |||||| Sbjct 31007 GCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCG 30948 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTC 66243 ||| || | || || | ||| | | | | | | | ||| ||||| | ||| Sbjct 30947 AACCACAGCTGCTGGGCGTTGATCGT-CTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTC 30889 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| ||||| || ||||| || | || | || || || || || Sbjct 30888 ATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCA 30829 Query 66304 CATCAGCGAC--CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 || || ||| || | |||| ||| || | ||| || |||||||| | ||| Sbjct 30828 -AT-AGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAA 30771 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 ||||||||||| || ||||| || || ||| ||| ||||||| || || || | ||| Sbjct 30770 AGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCC 30711 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | |||||| || | || || ||||| || |||| ||||||||||| |||||| |||| Sbjct 30710 AAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGC 30651 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||||| || || ||||| ||||| || ||| | ||| || || |||| ||| || | | Sbjct 30650 TTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATG 30591 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTG 66600 | || || || ||| || ||||| ||| | | | | || || || || | ||| Sbjct 30590 ATGCCATTGGACGAGCCGTTCGTGCC-TCGGATGTAGCTGTTGGTGGCTCGGATGTTGTG 30532 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT-CGGCCAC-TGTC 66658 | | | | |||||||| |||||| || ||||| ||||| | | || |||| Sbjct 30531 CATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTC 30472 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| ||||| ||||| | | |||| || ||| |||| || ||||| Sbjct 30471 --GTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGT 30414 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT--AAAGTAATGGCGAG 66776 || || ||| |||| || || || || || || ||||| ||| | | || | Sbjct 30413 GGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGC--G 30356 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTT 66813 |||| | ||||||||| | | | || ||||||| Sbjct 30355 ACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 30319 >seq1029 Length=318196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 |||| ||||| || |||| ||||||||||| |||||| | |||||||| || ||||||| Sbjct 194038 CGAAGAACCCGTTCGATTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCG 194097 Query 61910 AGAAACGTGTAGGCGACTA 61928 ||||||| || ||||| || Sbjct 194098 AGAAACGCGTGGGCGAGTA 194116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560169898240