Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq163 435 7e-119 >seq163 Length=10295 Score = 435 bits (482), Expect = 7e-119 Identities = 721/1030 (70%), Gaps = 43/1030 (4%) Strand=Plus/Minus Query 1101 ATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGC 1160 |||||||||| ||| || |||||||||||||| ||||| || || || || ||| | || Sbjct 4075 ATCAAGCAAGCCAACGGGTATTACCTTGTTCCCCGTAAACGCGAACTCCCCATCGAGGGA 4016 Query 1161 TGGATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGAG 1220 |||||||| || |||| ||| |||| || || ||||| ||| | || ||| Sbjct 4015 TGGATCGACCACCACAAGAAGACAAAGACCAAGATCAATGAGACGCTTGTCCTACTAGAG 3956 Query 1221 TACGGCACTCTACCTGCTGACAAACCCAA----TATCTCTGCTCAAG--TGACCAAGAGA 1274 | || || ||| || | ||| | | ||| ||| | || || | ||| | Sbjct 3955 TCTGGAAC---ACC-GCCAAAGAACACGACGGGTATG-CTGTTGGAGCCTGTC-AAGCGC 3902 Query 1275 TCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATC 1334 ||||||| |||||| | || ||||| || |||||| |||||||| |||||| Sbjct 3901 AGTTCAGAGGAGAAGAAGCGTAAGCTTGATGACATCATCATCGAGATGCGTACCATGATT 3842 Query 1335 GAAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGA 1394 ||||| || | ||| ||||||||||||||||||| || || |||||| | ||||||||| Sbjct 3841 GAAGAGGGGAGAGAAAAGGAAGCCTTCACCAAGTTCCCACGGAACTACCTCACCTATGGA 3782 Query 1395 GAAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCT 1454 |||||| | || || ||| || ||| | ||||| ||||||| ||| || ||||| Sbjct 3781 GAAAAGATCAAGGCCATGGTCGGACAAAAGAGAGACTTCTTCAAGAACAATGGAGACCCG 3722 Query 1455 CACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTAT 1514 ||||||||||| || || | ||||| || ||||| || |||||| | || || |||| Sbjct 3721 CACATCTGGCTCACGGGAGCACCTGGATCAGGCAAATCAGCCATCCTTCAAGTGGTCTAC 3662 Query 1515 CCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTG 1574 || || ||||||||| | || ||||||| ||||||||| ||||| | ||| ||| | Sbjct 3661 CCCAACTACTACAACAAGGACCTTAACAACCGCTTCTTCGACCTGTACAAACCAGAAGAG 3602 Query 1575 CACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAG 1634 |||||||||| || ||||| || || || ||| || || || | | || || ||| Sbjct 3601 CACACGCACACTCTACTTCAGGACGTGGACCACGGAACCGTGGAGAGACTAGGCGTGCAG 3542 Query 1635 TTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCG 1694 ||||| ||||||||||| || ||||| || ||||| ||||||| ||||||||||| ||| Sbjct 3541 TTCCTCAAGACCATCTGCGATGAAGCGGGATTCCCGATTGACCATAAGTACAAGACTCCG 3482 Query 1695 CAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCG 1754 ||||| ||||||| || | | |||| || ||||| | ||| ||||| |||| Sbjct 3481 CAACTCACTCGTACGACGGCGCTCATCTCGTCGAACTTTTCAATCTCTGATGTTCTTCCT 3422 Query 1755 GAAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTG 1814 || || ||||| ||||||||||| || || | ||||| ||||| || |||| || Sbjct 3421 GAGGATATGCCTGGACGCAATGAGAACCTCGCTGCTCTACGTCGCCGTTTCTGGGAGACA 3362 Query 1815 AACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAA- 1873 ||| ||| ||| | || | || ||||| ||||| ||||| |||||||| | || Sbjct 3361 AACACCCGTACTCTCCTTCAAGTCCTGGGACTCAAGCTACTGTCCAAGTACGAGATCAAG 3302 Query 1874 CGGCT-----TGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGAT 1928 |||| | || | | |||||| ||||| || ||| || |||||||| ||||| Sbjct 3301 GGGCTCAAGCTCAAGCTCAAGGGAAACCAAGACCCCCGCAAGCTATTCATGTCCTGGGAC 3242 Query 1929 TACACTCGTGACATTCCCACTGGAG-----AGTCGTTGAAGACTGCCAAGGAATACCAGC 1983 || ||| || ||| ||||| | | ||| | || || | | | ||||| Sbjct 3241 TATCTTCGCGATTGTCCTACTGGTGTTCCTATTCG--GGAGGCTTC---GTACTACCAAG 3187 Query 1984 AGATCATCAAGGATCACTACTA-CGGAACGAACACTTCGCCTCACTCGAGTCAGTAAGTA 2042 || | |||||| | ||||| || |||| || | || |||| | | Sbjct 3186 AGGTGATCAAGAAAGCGTACTATGGGGACGA------CG------TGGA--CAGTTCGCA 3141 Query 2043 AAAGACGATGTGGGACTTAACACTGCCAGGATACAAGTATCTAGGACCAGGAAACAAACT 2102 | || | ||||||||||| | || ||||| |||||||| ||||| || ||||| || || Sbjct 3140 ATAGGCAATGTGGGACTTGAGTCTCCCAGGGTACAAGTACCTAGGTCCTGGAAATAAGCT 3081 Query 2103 TGACAAGGGA 2112 | |||||||| Sbjct 3080 TAACAAGGGA 3071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11897389709920