Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8168 262 6e-68 seq53 122 1e-25 seq129 87.8 3e-15 seq400 80.6 4e-13 seq1240 73.4 6e-11 >seq8168 Length=2021 Score = 262 bits (290), Expect = 6e-68 Identities = 198/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 2021 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 1964 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 1963 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 1904 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| || |||||||||| ||||||||||||||||||||| Sbjct 1903 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 1844 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1843 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 1795 >seq53 Length=72612 Score = 122 bits (134), Expect = 1e-25 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 23589 ACTCGTTGAACGCATCAGTGTAGAGCGCGTGCGGGCCAGAACATCTAAGGGCATCACAGA 23648 Query 207 CCTGTTATTGCCTCAAACTTCC 228 ||||||||||| || ||||||| Sbjct 23649 CCTGTTATTGCATCCAACTTCC 23670 >seq129 Length=60279 Score = 87.8 bits (96), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||| || Sbjct 17343 CATCAGTGTAGTGCGCGTGCGGCTCAGAACGTTTAAGGGCATCACAGACCTGTTATTTCC 17402 Query 219 T 219 | Sbjct 17403 T 17403 >seq400 Length=34792 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||||||||||| |||| || ||| |||||| | | | |||||||||| ||||||||| || Sbjct 16637 GCAGGGACGTAATCAATGCAAGC-TGATGAGTTGGGTTTACTAGGAA-TTCCTCGTTCAA 16694 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||| | |||||||| |||||||| | ||| ||| Sbjct 16695 GACTGAAAATTGCAACATTCTATCCCTAGCACTATG 16730 >seq1240 Length=16997 Score = 73.4 bits (80), Expect = 6e-11 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1948 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGAGCATC 1906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751937756960