Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq848 129 1e-27 seq8168 82.4 1e-13 >seq848 Length=22595 Score = 129 bits (142), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGT--TCTATTTTGTTGGTTTCTAGG 176 ||| ||||| ||||||||||| ||| | | | ||| |||||||||||||||| | Sbjct 4857 ATATATTAGTATGGAATAATAAGATACGGCTTT-GGTAGTCTATTTTGTTGGTTTGCAC- 4800 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 || || |||||||||||||| ||| |||||||| |||| | |||||||||||| Sbjct 4799 ACTAGGGTTATGATTAATAGGGACAGTTGGGGGTGTATATATTTCAACGTCAGAGGTGAA 4740 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 ||||||||||| | |||| | || |||||||| || ||||||||| | ||||||| Sbjct 4739 ATTCTTGGATTGCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATATGTTCATTA 4680 Query 297 ATCA 300 |||| Sbjct 4679 ATCA 4676 >seq8168 Length=2021 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||| | |||| | || |||||||| || |||||||||||||||| Sbjct 1071 GAAATTCTTGGATCGCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCA 1130 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||||||| Sbjct 1131 TTAATCA-AGAACGAAAGTTAGGGG 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915121805312