Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4469 104 6e-20 >seq4469 Length=16579 Score = 104 bits (114), Expect = 6e-20 Identities = 232/344 (67%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| | |||||| ||| ||||||||||||||||||||||| | Sbjct 5452 TACTTAAAAAAGAAGTTCTGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAAGA 5394 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT 120 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| Sbjct 5393 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT----- 5339 Query 121 GTGAAATCCCCGGGCTTAACCTGGGAATTG--CATTTGTG----ACTGCACGACTAGAGT 174 ||||| | | || || || ||||| | |||| ||| |||| Sbjct 5338 -TGAAAAAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTGGAGT 5280 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 5279 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 5220 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 ||| |||||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 5219 GACCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 5160 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| ||||||||||||| ||||||||| || |||||||| Sbjct 5159 AGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 5116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289489816576