Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8081 336 4e-90 seq293 304 2e-80 seq272 224 2e-56 seq18 78.8 2e-12 >seq8081 Length=1584 Score = 336 bits (372), Expect = 4e-90 Identities = 218/239 (91%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 TCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAATT 60 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 GGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTC 120 Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 GCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 180 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | ||||| | | ||||||||||||||||||||| |||||| |||||||||||| Sbjct 181 AGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTCA 239 >seq293 Length=40454 Score = 304 bits (336), Expect = 2e-80 Identities = 212/240 (88%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 32478 GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAAT 32419 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | | | |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 32418 TGGCCAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGT 32359 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||| ||||||||||| |||||||||| ||||||||||| |||||| Sbjct 32358 CGCTATGAACGC-AGGCTACCACAAGCCAGATATCCCTGTGTTAACTTTTCTGACACCTC 32300 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||| | ||||| | | ||||||||||||||||| ||| |||||| | |||||||||| Sbjct 32299 TAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGTCACGCTTTCACGATTTGTATTCA 32240 >seq272 Length=42375 Score = 224 bits (248), Expect = 2e-56 Identities = 154/174 (89%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| | ||||| |||||||||||||| |||||||||| ||||||||| || |||||||| Sbjct 5345 ATTTTTCTTCGCAATGATAGGAAGAGCTGACATCGAAGAATCAAAAAGGAATGTCGCTAT 5404 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 5405 GGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 5464 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | | ||||||||||||||||| ||| |||||| |||||||||||| Sbjct 5465 AAAATTCTAAAGAACTAAAGGATCGATAGGTCACCCTTTCACGGTTTGTATTCA 5518 >seq18 Length=91118 Score = 78.8 bits (86), Expect = 2e-12 Identities = 61/74 (82%), Gaps = 9/74 (12%) Strand=Plus/Plus Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||||||||||| ||||||||||||||||||||| ||||||||||||| || Sbjct 35162 GGAAGAGCCGAC---------TCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCCCAC 35212 Query 200 GCCAGTTATCCCTG 213 ||||||||||| || Sbjct 35213 GCCAGTTATCCGTG 35226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854327000064