Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4469 134 5e-29 >seq4469 Length=16579 Score = 134 bits (148), Expect = 5e-29 Identities = 355/532 (67%), Gaps = 20/532 (4%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | ||||||||| || |||||||||| Sbjct 9905 ATTCGGAGTTTCCAAGAATTCAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 9964 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 9965 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 10023 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 10024 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 10083 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 10084 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 10143 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 | |||||||||| | | ||| | | | | | || ||| | ||| ||||| ||| Sbjct 10144 GTTTCGGGTCTTATTTATATAACTAAAAAG-CTTTTTAAAACTTGATTTATCTACGCCTA 10202 Query 356 CCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCA 415 | | |||| || || | | || ||||| || ||| |||| | ||||||| | Sbjct 10203 CTTTA-TTAAATTAAGCTTGCTATA-AAAATAAACTTGCTGGCCCATTATACAAAAGGTA 10260 Query 416 CGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTC 475 | | ||||| | || |||||| |||| | |||||| || ||||| Sbjct 10261 CACTGTCACTTTTTA--TAAAAG---TTTCA------ATTGATTGTTAACATTAAGTTTC 10309 Query 476 AGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 | | | ||||||| | | | | | ||||||||||||| | || |||||||| | Sbjct 10310 A-GAATTATTTCA---AACTCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCA 10365 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||||| ||| || || |||| || |||||||||| | | ||||| Sbjct 10366 CTATCGATCATTAATTTTTA-ATAGGTTTTGAGGGTGGTCCCCCAATATTCA 10416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817444704256