Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4469 118 3e-24 >seq4469 Length=16579 Score = 118 bits (130), Expect = 3e-24 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||| ||| ||| ||| || |||| |||| |||| ||| || Sbjct 5480 CTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 5539 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 5540 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 5598 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | || ||| | | |||| | | Sbjct 5599 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAAGCTTGGTAGTCTATTAAACTAC 5658 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 5659 CAACTACCATAATC 5672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222295558144