Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4469 228 2e-57 >seq4469 Length=16579 Score = 228 bits (252), Expect = 2e-57 Identities = 261/343 (76%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| ||||| | ||||||||| ||| | ||||||| | ||| |||| | Sbjct 5678 GCGTAAGATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCTTATTATCTTTAGCTGGT 5619 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| || ||||| |||||||||| |||||||||||| ||||||| | |||||| Sbjct 5618 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAG 5560 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||| Sbjct 5559 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGA 5500 Query 340 AGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA 398 |||| | ||| |||||||||| || | ||||| || |||||| |||||| | | || Sbjct 5499 AGGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGA 5440 Query 399 AGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 || | |||||| || |||||||||||||||||||||||| | || ||| |||| | Sbjct 5439 AGTTCTGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAAGAGCGAGCATTATTC 5381 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||| | | |||||||||||| ||||||||||| |||||| Sbjct 5380 GGAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 5339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497472045056