Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8168 255 1e-65 seq53 125 1e-26 seq1664 86.0 1e-14 seq129 84.2 4e-14 seq400 82.4 1e-13 >seq8168 Length=2021 Score = 255 bits (282), Expect = 1e-65 Identities = 213/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 1761 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 1820 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1821 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 1880 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 1881 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 1940 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 1941 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 2000 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 2001 TTACGTCCCTGCCCTTTGTA 2020 >seq53 Length=72612 Score = 125 bits (138), Expect = 1e-26 Identities = 103/125 (82%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| || ||||||||||||||| Sbjct 23704 CTTCTTAGAGGGACTTTAGGATAATCAAACCAAAGGAAGTTGGATGCAATAACAGGTCTG 23645 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||| |||||||||| ||||||||| |||||||| || Sbjct 23644 TGATGCCCTTAGATGTTCTGGCCCGCACGCGCTCTACACTGATGCGTTCAACGAGTACAC 23585 Query 189 CACCT 193 |||| Sbjct 23584 AACCT 23580 >seq1664 Length=12754 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||||||||||| |||| || ||| ||| |||||||| |||||||| | | | Sbjct 5214 AGGTCTGGGTAATTTTGTGAATTCGCATCGAGCTAGGGATAGACTGTTGCAATTTTCGGT 5155 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||||| ||||||| ||| || ||||| || |||||||||||| Sbjct 5154 CTTGAACGAGGAATTTCTAGTAAACGCAAGTTGTCAGCTTGCATTGATTACGTCC 5100 >seq129 Length=60279 Score = 84.2 bits (92), Expect = 4e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||| |||||||||||||||||||||||| | |||||| ||||||||||| ||||||||| Sbjct 17403 AGGAAATAACAGGTCTGTGATGCCCTTAAACGTTCTGAGCCGCACGCGCACTACACTGA 17345 >seq400 Length=34792 Score = 82.4 bits (90), Expect = 1e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||||| |||||||| |||||||| | |||| |||||||||| |||||||| | | Sbjct 16726 GTGCTAGGGATAGAATGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACCCAA 16667 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||||||| || |||||||||||||||| Sbjct 16666 CTCATCAGCTTGCATTGATTACGTCCCTGC 16637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947119071232