Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4469 145 3e-32 >seq4469 Length=16579 Score = 145 bits (160), Expect = 3e-32 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 10154 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 10095 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 10094 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 10035 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 10034 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 9975 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| || ||| Sbjct 9974 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTGAATTCTTGG 9916 Query 274 AAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | || |||| || || | || ||||||||| Sbjct 9915 AAACTCCGAATACAAAAAAACGTAATTTA----AATAGACAGACATTAGGCGCTAAGGTC 9860 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 9859 TATTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCAAAATAATATTCTAAG 9801 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 9800 TGAAA--AAGGAAGTGAAAAAATAATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 9744 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 9743 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 9711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689455640576