Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6666 273 2e-68 seq1232 219 3e-52 seq92 84.2 2e-11 >seq6666 Length=2405 Score = 273 bits (302), Expect = 2e-68 Identities = 599/890 (67%), Gaps = 33/890 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 2298 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 2239 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 2238 GCGTCATTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 2179 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||| ||||| || || Sbjct 2178 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCTGC 2126 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | || ||||| | Sbjct 2125 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGG 2070 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || ||||||| || || |||||||| |||||||| ||||| ||||| ||||||| ||| Sbjct 2069 TGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGG 2010 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 |||| | ||||| || |||||||||| ||| | |||| || | || | Sbjct 2009 TGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGC 1950 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC- 61461 ||||||||| ||||| ||| |||||| ||||||| | ||||| |||| ||| | Sbjct 1949 GTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 1890 Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 ||| | | | | | | || || ||||||| || || | || ||||| | Sbjct 1889 ACCCGCG-AGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATC 1831 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| || ||||| | | ||||| ||| | ||||| || || || ||||| || Sbjct 1830 TTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGC 1771 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGT 61640 |||| |||| || ||| |||| || |||||||||||||| || || || || Sbjct 1770 CTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC 1711 Query 61641 TT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 | || || || || |||||||| | | ||||| || ||| ||||| Sbjct 1710 CTCATG-TACTCCAAG-----CTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATC 1657 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || || || ||||| || ||||| || || || || |||| | | || || || Sbjct 1656 GTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTG 1597 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 ||||||||||| | || || |||| ||||| || || || || |||||||||||| || Sbjct 1596 ATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTG 1537 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 | ||||| || | |||||| || || ||||| || || | ||||||||| Sbjct 1536 TACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATG 1477 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || |||||| | ||||||||||| ||||||||||| || || ||||| || Sbjct 1476 ATCTCGCTGCAGGGCAAGACGAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1427 >seq1232 Length=16645 Score = 219 bits (242), Expect = 3e-52 Identities = 1103/1717 (64%), Gaps = 73/1717 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || ||| || ||||| |||||||| | | | || Sbjct 366 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG-TGAGCTT 424 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 425 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCAC 483 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 | || || || | || ||| | | || | || | |||||||| || ||||||||| Sbjct 484 CGCGGTCGGCCGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 542 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || ||| ||| | || ||| || || || | | ||| ||| Sbjct 543 TT-CTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTCGTTCAA 601 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 | | | || |||| | | ||| | || | ||||| || | | | || || Sbjct 602 GA-TCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGT 660 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| |||| | | |||||| || | ||| || || ||| || |||||||||| Sbjct 661 -AC--TTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACG 717 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || |||| || || || ||||| || || || || ||||||| Sbjct 718 TGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGG 777 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGT------TCATTTCAATGTTGTGACGCAATT 65588 | || |||| || ||||| || | ||||| ||| || ||| | || | Sbjct 778 GGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCCTTGAG-CGTAG-- 834 Query 65589 CGTCCCAGTTCCACATCGGTTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAG 65646 ||||||||||||| || |||| ||| |||||| || || | Sbjct 835 ---CCCAGTTCCACATACC-----CGACGACGGGGTGACGCCCCACATGTCGAACTGGAA 886 Query 65647 GGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAG 65706 | | || | || || || || || |||| | |||||| || |||||||| | Sbjct 887 GATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGAT 946 Query 65707 TTGACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTT 65765 | || | ||||| | ||||| || || ||||||||||| ||| || || | Sbjct 947 CTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCT 1005 Query 65766 CACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCT 65824 | || |||| ||||||||| ||| | || ||| |||| ||| | ||| || || || Sbjct 1006 CCCGGGCCTTCTCGCTCTCGAACG-CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCC 1064 Query 65825 TGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGG 65884 || || |||||||||||||| || ||||||| ||||| | |||||| || ||| Sbjct 1065 TGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGG 1124 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGC 65944 ||||| |||| ||||| | || || ||||| || ||||| | | ||| | Sbjct 1125 TAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTC-------GTCAC 1177 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 ||| | ||| | | || | | | | || | |||| ||||| || Sbjct 1178 -----TTCATA--CAACTTCT---GGTAGTTGAAAACT-CCTTCCTCCACGAACTTAGGC 1226 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || | |||||| ||||| | |||||| || | || ||||| | | Sbjct 1227 AGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACC 1286 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||| | || ||| |||| || ||||| | |||| || || |||||| ||| Sbjct 1287 TCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTG 1346 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || |||||||||| ||| | || || ||||||| |||| || | |||||| Sbjct 1347 GCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCG 1406 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTC 66243 ||| || | || || | ||| | | | | | | | ||| ||||| | ||| Sbjct 1407 AACCACAGCTGCTGGGCGTTGATCGT-CTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTC 1465 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| ||||| || ||||| || | || | || || || || || Sbjct 1466 ATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCA 1525 Query 66304 CATCAGCGAC--CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 || || ||| || | |||| ||| || | ||| || |||||||| | ||| Sbjct 1526 -AT-AGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAA 1583 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 ||||||||||| || ||||| || || ||| ||| ||||||| || || || | ||| Sbjct 1584 AGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCC 1643 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | |||||| || | || || ||||| || |||| ||||||||||| |||||| |||| Sbjct 1644 AAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGC 1703 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||||| || || ||||| ||||| || ||| | ||| || || |||| ||| || | | Sbjct 1704 TTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATG 1763 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTG 66600 | || || || ||| || ||||| ||| | | | | || || || || | ||| Sbjct 1764 ATGCCATTGGACGAGCCGTTCGTGCC-TCGGATGTAGCTGTTGGTGGCTCGGATGTTGTG 1822 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT-CGGCCAC-TGTC 66658 | | | | |||||||| |||||| || ||||| ||||| | | || |||| Sbjct 1823 CATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTC 1882 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| ||||| ||||| | | |||| || ||| |||| || ||||| Sbjct 1883 --GTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGT 1940 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT--AAAGTAATGGCGAG 66776 || || ||| |||| || || || || || || ||||| ||| | | || | Sbjct 1941 GGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGC--G 1998 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTT 66813 |||| | ||||||||| | | | || ||||||| Sbjct 1999 ACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 2035 >seq92 Length=63871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 |||| ||||| || |||| ||||||||||| |||||| | |||||||| || ||||||| Sbjct 54184 CGAAGAACCCGTTCGATTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCG 54243 Query 61910 AGAAACGTGTAGGCGACTA 61928 ||||||| || ||||| || Sbjct 54244 AGAAACGCGTGGGCGAGTA 54262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397526601244160