Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq3955 435 7e-119 >seq3955 Length=4440 Score = 435 bits (482), Expect = 7e-119 Identities = 721/1030 (70%), Gaps = 43/1030 (4%) Strand=Plus/Minus Query 1101 ATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGC 1160 |||||||||| ||| || |||||||||||||| ||||| || || || || ||| | || Sbjct 3301 ATCAAGCAAGCCAACGGGTATTACCTTGTTCCCCGTAAACGCGAACTCCCCATCGAGGGA 3242 Query 1161 TGGATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGAG 1220 |||||||| || |||| ||| |||| || || ||||| ||| | || ||| Sbjct 3241 TGGATCGACCACCACAAGAAGACAAAGACCAAGATCAATGAGACGCTTGTCCTACTAGAG 3182 Query 1221 TACGGCACTCTACCTGCTGACAAACCCAA----TATCTCTGCTCAAG--TGACCAAGAGA 1274 | || || ||| || | ||| | | ||| ||| | || || | ||| | Sbjct 3181 TCTGGAAC---ACC-GCCAAAGAACACGACGGGTATG-CTGTTGGAGCCTGTC-AAGCGC 3128 Query 1275 TCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATC 1334 ||||||| |||||| | || ||||| || |||||| |||||||| |||||| Sbjct 3127 AGTTCAGAGGAGAAGAAGCGTAAGCTTGATGACATCATCATCGAGATGCGTACCATGATT 3068 Query 1335 GAAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGA 1394 ||||| || | ||| ||||||||||||||||||| || || |||||| | ||||||||| Sbjct 3067 GAAGAGGGGAGAGAAAAGGAAGCCTTCACCAAGTTCCCACGGAACTACCTCACCTATGGA 3008 Query 1395 GAAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCT 1454 |||||| | || || ||| || ||| | ||||| ||||||| ||| || ||||| Sbjct 3007 GAAAAGATCAAGGCCATGGTCGGACAAAAGAGAGACTTCTTCAAGAACAATGGAGACCCG 2948 Query 1455 CACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTAT 1514 ||||||||||| || || | ||||| || ||||| || |||||| | || || |||| Sbjct 2947 CACATCTGGCTCACGGGAGCACCTGGATCAGGCAAATCAGCCATCCTTCAAGTGGTCTAC 2888 Query 1515 CCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTG 1574 || || ||||||||| | || ||||||| ||||||||| ||||| | ||| ||| | Sbjct 2887 CCCAACTACTACAACAAGGACCTTAACAACCGCTTCTTCGACCTGTACAAACCAGAAGAG 2828 Query 1575 CACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAG 1634 |||||||||| || ||||| || || || ||| || || || | | || || ||| Sbjct 2827 CACACGCACACTCTACTTCAGGACGTGGACCACGGAACCGTGGAGAGACTAGGCGTGCAG 2768 Query 1635 TTCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCG 1694 ||||| ||||||||||| || ||||| || ||||| ||||||| ||||||||||| ||| Sbjct 2767 TTCCTCAAGACCATCTGCGATGAAGCGGGATTCCCGATTGACCATAAGTACAAGACTCCG 2708 Query 1695 CAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCG 1754 ||||| ||||||| || | | |||| || ||||| | ||| ||||| |||| Sbjct 2707 CAACTCACTCGTACGACGGCGCTCATCTCGTCGAACTTTTCAATCTCTGATGTTCTTCCT 2648 Query 1755 GAAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTG 1814 || || ||||| ||||||||||| || || | ||||| ||||| || |||| || Sbjct 2647 GAGGATATGCCTGGACGCAATGAGAACCTCGCTGCTCTACGTCGCCGTTTCTGGGAGACA 2588 Query 1815 AACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAA- 1873 ||| ||| ||| | || | || ||||| ||||| ||||| |||||||| | || Sbjct 2587 AACACCCGTACTCTCCTTCAAGTCCTGGGACTCAAGCTACTGTCCAAGTACGAGATCAAG 2528 Query 1874 CGGCT-----TGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGAT 1928 |||| | || | | |||||| ||||| || ||| || |||||||| ||||| Sbjct 2527 GGGCTCAAGCTCAAGCTCAAGGGAAACCAAGACCCCCGCAAGCTATTCATGTCCTGGGAC 2468 Query 1929 TACACTCGTGACATTCCCACTGGAG-----AGTCGTTGAAGACTGCCAAGGAATACCAGC 1983 || ||| || ||| ||||| | | ||| | || || | | | ||||| Sbjct 2467 TATCTTCGCGATTGTCCTACTGGTGTTCCTATTCG--GGAGGCTTC---GTACTACCAAG 2413 Query 1984 AGATCATCAAGGATCACTACTA-CGGAACGAACACTTCGCCTCACTCGAGTCAGTAAGTA 2042 || | |||||| | ||||| || |||| || | || |||| | | Sbjct 2412 AGGTGATCAAGAAAGCGTACTATGGGGACGA------CG------TGGA--CAGTTCGCA 2367 Query 2043 AAAGACGATGTGGGACTTAACACTGCCAGGATACAAGTATCTAGGACCAGGAAACAAACT 2102 | || | ||||||||||| | || ||||| |||||||| ||||| || ||||| || || Sbjct 2366 ATAGGCAATGTGGGACTTGAGTCTCCCAGGGTACAAGTACCTAGGTCCTGGAAATAAGCT 2307 Query 2103 TGACAAGGGA 2112 | |||||||| Sbjct 2306 TAACAAGGGA 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896488169280