Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq21657 262 6e-68 seq45402 259 7e-67 seq35718 259 7e-67 seq14081 251 1e-64 seq2542 163 4e-38 seq33427 141 1e-31 seq42903 100 4e-19 seq26116 75.2 2e-11 >seq21657 Length=965 Score = 262 bits (290), Expect = 6e-68 Identities = 198/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 618 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 675 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 676 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 735 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| || |||||||||| ||||||||||||||||||||| Sbjct 736 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 795 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 796 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 844 >seq45402 Length=31084 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 10335 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 10278 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| | |||||| | ||||||| |||| |||||| Sbjct 10277 CTCGTTCAAGACTGAAAATTGCAACAGTATATCCCTAGCACGATGCGCATTCACAAGATT 10218 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 10217 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 10158 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 10157 GCCCAGAGCATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 10109 >seq35718 Length=2485 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 1023 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 966 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 965 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 906 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| || |||||||||| |||||||||||||| |||||| Sbjct 905 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCCCGTGCG 846 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 845 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 797 >seq14081 Length=559 Score = 251 bits (278), Expect = 1e-64 Identities = 193/225 (86%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 || ||||||||||||| |||| || |||| ||||||| ||| |||||||||||| ||||| Sbjct 557 AAGGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-CCTCG 500 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCC 123 || ||||| | |||||||| |||||||| | ||||||| |||| |||||||||| Sbjct 499 TTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATTACCC 440 Query 124 GGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCC 183 ||||| ||| |||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 439 AGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCC 380 Query 184 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 379 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 335 >seq2542 Length=338 Score = 163 bits (180), Expect = 4e-38 Identities = 149/182 (82%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 21 GTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATT 80 ||||| || |||| ||||||| ||| |||||||||||| ||||||| ||||| | |||| Sbjct 159 GTCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-CCTCGTTCAAGACTGAAAATT 216 Query 81 G--CAATGATCTATCCCCATCACGATGAAATTTCA-AAGA-TTACCCGGACCTGTCGGCC 136 ||| |||||||| | ||||||| |||| |||| |||||| ||||| ||| | Sbjct 217 TGACAACAGTCTATCCCTAGCACGATGCGCATTCACAAGACTTACCCAGACCTATCGATC 276 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 277 AAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 336 Query 197 GC 198 || Sbjct 337 GC 338 >seq33427 Length=2051 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 14 CAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 73 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||| ||||||| Sbjct 74 GGCATCACAGACCTGTTATTGCCTCCAACTTCC 106 >seq42903 Length=10335 Score = 100 bits (110), Expect = 4e-19 Identities = 82/96 (85%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || ||| |||||||| ||| |||||||||| ||| Sbjct 2287 GTACAAAGGGCAGGGACGTAATCAATGCAAGC-TGATGACTTGCGTTTACTAGGAA-TTC 2230 Query 61 CTCGTTGAAGAC-CAACAATTGCAATGATCTATCCC 95 |||||| ||||| || |||||||| |||||||| Sbjct 2229 CTCGTTCAAGACTGAAAAATTGCAACAGTCTATCCC 2194 >seq26116 Length=1118 Score = 75.2 bits (82), Expect = 2e-11 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751662995900