Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq26116 228 1e-57 seq45402 214 3e-53 seq1223 208 1e-51 seq3700 179 7e-43 seq1878 152 9e-35 seq3363 102 1e-19 seq4444 93.3 8e-17 seq43162 80.6 5e-13 >seq26116 Length=1118 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 600 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 541 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 540 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 482 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 481 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 422 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 421 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 363 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 362 AAGTTAGGGG 353 >seq45402 Length=31084 Score = 214 bits (236), Expect = 3e-53 Identities = 200/250 (80%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| Sbjct 9432 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTTATTTGAATACATTAGCA 9491 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | ||||||||||||| || | ||| |||||| Sbjct 9492 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGGTTGCAC-ACCAGGGTAATG 9550 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||| | ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 9551 ATTAATAGGAACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 9610 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 9611 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 9669 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 9670 AAGTTAGGGG 9679 >seq1223 Length=273 Score = 208 bits (230), Expect = 1e-51 Identities = 187/232 (81%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 232 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 173 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 172 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 114 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 113 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 54 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 | |||| | || |||||||| || ||||||||||||||||||||||| Sbjct 53 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA 2 >seq3700 Length=390 Score = 179 bits (198), Expect = 7e-43 Identities = 171/216 (79%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 176 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 235 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 236 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 294 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 295 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 354 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 | |||| | || |||||||| || ||||||| Sbjct 355 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGG 390 >seq1878 Length=308 Score = 152 bits (168), Expect = 9e-35 Identities = 137/169 (81%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 127 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 186 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 187 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACCAGGGTAATG 245 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||| ||| |||||| | |||| | ||||||||||||| Sbjct 246 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAA 294 >seq3363 Length=377 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||| ||| |||| ||| |||| | |||||||||||||||||||||| | ||| Sbjct 377 GGGACAGTTGGGGTATTCA-TATTTCAGCGTCAGAGGTGAAATTCTTGGATCGCTGAAAG 319 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | | || |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 318 ATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAG 260 Query 316 GGG 318 ||| Sbjct 259 GGG 257 >seq4444 Length=244 Score = 93.3 bits (102), Expect = 8e-17 Identities = 100/126 (79%), Gaps = 10/126 (8%) Strand=Plus/Plus Query 87 AATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAAT 143 |||||||||||| |||||||| || |||| ||||||||||||||||||||||| || Sbjct 125 AATTAGAGTGTT--AAGCAGGCGTT-GCTCATTGAATACATTAGCATGGAATAATAAGAT 181 Query 144 A-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAG 202 | || | || | |||| |||||||||| | ||| ||||||||||||||||| || Sbjct 182 ACGGCCTTGGTGGTCTA-TTTGTTGGTTGC--ACACCAGGGTAATGATTAATAGGGACAG 238 Query 203 TCGGGG 208 | |||| Sbjct 239 TTGGGG 244 >seq43162 Length=11326 Score = 80.6 bits (88), Expect = 5e-13 Identities = 60/70 (86%), Gaps = 4/70 (6%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| | |||||| ||||||||| |||||||| ||||||| ||||||||||||| Sbjct 5124 TTTACTGTAAAAAAAATAGAGTGTTTAAAGCAGGTGTTTGCTCATTTGAATACATTAGCA 5065 Query 130 TGGAATAATA 139 |||||||||| Sbjct 5064 TGGAATAATA 5055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914776628480