Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq46233 105 9e-21 >seq46233 Length=1259 Score = 105 bits (116), Expect = 9e-21 Identities = 171/243 (70%), Gaps = 16/243 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 773 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 831 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || |||| | || Sbjct 832 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGA------CACCTAATTAAT---- 881 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 882 --TTAAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 937 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 938 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 997 Query 246 GTA 248 ||| Sbjct 998 GTA 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694088808980