Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq46233 221 3e-55 seq46223 176 1e-41 seq45880 136 1e-29 >seq46233 Length=1259 Score = 221 bits (244), Expect = 3e-55 Identities = 209/268 (78%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 595 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 654 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 655 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 714 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 |||||||||||||||||| ||| |||| || | || || ||| | | Sbjct 715 GAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGC---------GCAAACATCTCC 765 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||| ||||| |||||||||||| |||| ||||||||| || || | || |||| Sbjct 766 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 825 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCA 280 ||| || ||||||| |||||||||||| Sbjct 826 AGTCCTAAGTTTTTATTAAACAGTCGCA 853 >seq46223 Length=1214 Score = 176 bits (194), Expect = 1e-41 Identities = 130/152 (86%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 1027 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1086 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1087 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1146 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 |||||||||||||||||| ||| |||| || Sbjct 1147 GAGTTACGGCCGCCGTTTACTGGGACTTCCAT 1178 >seq45880 Length=47478 Score = 136 bits (150), Expect = 1e-29 Identities = 130/168 (77%), Gaps = 9/168 (5%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 22561 TCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAACGAATTTCGCTACCTTATGAC 22620 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC 187 ||| | |||| | ||||||||||| ||| |||| | || || | ||| Sbjct 22621 CGTCAGAGTTATGACCGCCGTTTACTGGGACTTCCGTTTAGTGC---------ACAAACA 22671 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 | | |||| ||||| |||||||||||| |||| ||||||||| || Sbjct 22672 TCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATC 22719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260216753920