Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq46232 246 9e-63 seq2180 154 4e-35 seq46059 95.1 4e-17 >seq46232 Length=3510 Score = 246 bits (272), Expect = 9e-63 Identities = 354/497 (71%), Gaps = 34/497 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 708 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 649 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 648 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 600 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||| | ||||||| ||||||||||||||| Sbjct 599 TAAAATATTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 551 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC-- 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| || Sbjct 550 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTGTTAGTTGCTATTTT 491 Query 245 ATTAAGTTGG------GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 ||||| ||||||||| | ||| | ||||||||||| Sbjct 490 ATTAAAAAAAATAAAAGCACTCTAACAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 431 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| |||||||||||||||||||||||| | | Sbjct 430 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGATAATT 371 Query 359 ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| | | ||| | | | || | |||||||| ||| || | || |||||| Sbjct 370 ACAATGAGAAGCAATAATGATCAAAGTTGGAGCAAATCTTTAAAAATTATCCT-AGTTCG 312 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 |||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||||| Sbjct 311 GATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCAT 252 Query 476 GCTACGGTGAATACGTT 492 ||| ||||||||| ||| Sbjct 251 GCTGCGGTGAATATGTT 235 >seq2180 Length=322 Score = 154 bits (170), Expect = 4e-35 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347 |||||||||||| |||||||| || ||||| |||||||| ||||||||||||||| || Sbjct 89 GGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGGGTTGGGCTACACACGTCATA 148 Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCG---AGGTCAAGCAAATCCCATAAAGTTG 404 ||||| | ||||| | | ||| | | | || | |||||||| ||| || Sbjct 149 CAATGATAATTACAATGAGAAGCAATAATGATCAAAGTTGGAGCAAATCTTTAAAAATTA 208 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 | || |||||||||| | ||| |||||| | ||||||| |||||||||||||||||| Sbjct 209 TCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCG 267 Query 465 TAGATCAGCATGCTACGGTGAATACGTT 492 ||| ||||||||| ||||||||| ||| Sbjct 268 CAGAACAGCATGCTGCGGTGAATATGTT 295 >seq46059 Length=63368 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 7386 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 7444 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 7445 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 7491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503304249600