Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq14081 304 2e-80 seq45402 300 2e-79 seq35718 289 5e-76 seq26116 259 8e-67 seq21657 199 6e-49 seq33427 156 7e-36 >seq14081 Length=559 Score = 304 bits (336), Expect = 2e-80 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 343 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC----AGCCACCAACCA 129 ||||||| |||| | || | |||| ||||||||||||||| | | || |||| | Sbjct 342 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTCCAAAAA 283 Query 130 -TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 282 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 223 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 163 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 162 TCAATCTGTC 153 >seq45402 Length=31084 Score = 300 bits (332), Expect = 2e-79 Identities = 217/250 (87%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 10176 TCAGTGTAGCGCGCGTGCGGCCCAGAGCATCTAAGGGCATCACAGACCTGTTATTGCCTC 10117 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| | || | || | |||| ||||||||||||||| | | | ||||| Sbjct 10116 CAACTTCCTTCGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 10057 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || | || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 10056 ATGGTAAACGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 9997 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9996 AATCACTCCACAAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 9937 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 9936 TCAATCTGTC 9927 >seq35718 Length=2485 Score = 289 bits (320), Expect = 5e-76 Identities = 210/242 (87%), Gaps = 7/242 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 TCAGTGTAGCGCCCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 805 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 804 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACATACCTACCAAAA 745 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 744 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 685 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 625 Query 249 TC 250 || Sbjct 624 TC 623 >seq26116 Length=1118 Score = 259 bits (286), Expect = 8e-67 Identities = 195/227 (86%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 40 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCC 97 |||||||||||||||||||||||||||||||||||| ||||||| |||| | || | || Sbjct 1 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCTTTGGTTTGATTACCC 60 Query 98 AATAGTCCCTCTAAGAAGCC-----AGCCACCAACCATAGTCGATGGGGCTATTTAGCAG 152 || ||||||||||||||| | | | ||||| || || || |||||||||| Sbjct 61 AAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAAATGGTAAGCGGAACTATTTAGCAC 120 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 180 Query 213 CCATGCACCACCACCCATAG-AATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 181 CCATGCACCACCACCCATAGAAATCAAGAAAGAGCTCTCAATCTGTC 227 >seq21657 Length=965 Score = 199 bits (220), Expect = 6e-49 Identities = 158/189 (84%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 836 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| |||||| |||||||| | | | ||||| Sbjct 837 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCACTAAGAAGTCCACAAACCTACCAAAA 896 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 897 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 956 Query 189 AATCACTCC 197 ||||||||| Sbjct 957 AATCACTCC 965 >seq33427 Length=2051 Score = 156 bits (172), Expect = 7e-36 Identities = 133/163 (82%), Gaps = 7/163 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 98 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 99 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 158 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 || || || |||||||||| | ||||||||||| ||| Sbjct 159 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCATTA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796442919060