Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq46233 113 9e-23 seq46223 113 9e-23 >seq46233 Length=1259 Score = 113 bits (124), Expect = 9e-23 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 416 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGT 357 Query 173 CCAAAGATACCCTCAGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || |||| |||||| | | || | | || || || ||||| || Sbjct 356 ACAAAGGTAAGCTCAAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTG 297 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| | Sbjct 296 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAAT 237 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 236 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 188 >seq46223 Length=1214 Score = 113 bits (124), Expect = 9e-23 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 848 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGT 789 Query 173 CCAAAGATACCCTCAGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || |||| |||||| | | || | | || || || ||||| || Sbjct 788 ACAAAGGTAAGCTCAAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTG 729 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| | Sbjct 728 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAAT 669 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 668 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981945541760