Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq46233 122 1e-25 seq46223 122 1e-25 seq45880 93.3 5e-17 >seq46233 Length=1259 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 564 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 623 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 624 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 683 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 684 GACAAGGAATTTCGCTACCTTAGGACCGT 712 >seq46223 Length=1214 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 996 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 1055 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 1056 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 1115 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 1116 GACAAGGAATTTCGCTACCTTAGGACCGT 1144 >seq45880 Length=47478 Score = 93.3 bits (102), Expect = 5e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 22565 TACACCATTCATGCAGGTCGGAACTTACCCGACAACGAATTTCGCTACCTTATGACCGT 22623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546954775740