Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq46232 118 2e-24 seq46228 118 2e-24 seq19975 96.9 7e-18 >seq46232 Length=3510 Score = 118 bits (130), Expect = 2e-24 Identities = 135/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 1165 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 1223 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 1224 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 1282 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | ||| || || | || | || |||||||| | ||||| Sbjct 1283 CAGCTAAAGATAATAGGCTTTGT-AGTCTTTTAAACT-ACCAACTACCATAATC 1334 >seq46228 Length=739 Score = 118 bits (130), Expect = 2e-24 Identities = 135/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 360 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 418 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 419 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 477 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | ||| || || | || | || |||||||| | ||||| Sbjct 478 CAGCTAAAGATAATAGGCTTTGT-AGTCTTTTAAACT-ACCAACTACCATAATC 529 >seq19975 Length=892 Score = 96.9 bits (106), Expect = 7e-18 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 || |||||||| |||||||||| ||||||||||||||||| | ||| ||| |||| Sbjct 103 CAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT---TAAAAAGTTTGGGCCGT 47 Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 |||||||| ||| |||| |||||||| || ||| ||||| || Sbjct 46 GTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071504092800