Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq35718 77.0 2e-12 seq21657 77.0 2e-12 seq4475 77.0 2e-12 seq42903 75.2 7e-12 >seq35718 Length=2485 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 1068 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 1011 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 1010 GGACGTAAT-CAATGCAAGCT 991 >seq21657 Length=965 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 573 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 630 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 631 GGACGTAAT-CAATGCAAGCT 650 >seq4475 Length=420 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 84 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 27 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 26 GGACGTAAT-CAATGCAAGCT 7 >seq42903 Length=10335 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| Sbjct 2315 TTCAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAATGCAA 2258 Query 122 GCT 124 ||| Sbjct 2257 GCT 2255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300669546800