Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq46232 111 3e-22 seq46228 111 3e-22 seq19975 78.8 2e-12 >seq46232 Length=3510 Score = 111 bits (122), Expect = 3e-22 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || |||||||||||||| | ||| | Sbjct 1181 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTT 1239 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| || ||| || |||| ||| | || Sbjct 1240 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 1299 Query 127 CTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||| || | || ||| |||||||||| ||||| ||| | | ||||||| | || | Sbjct 1300 CTTTGTAGTCTTTTAAACTACCAACTACCATAATCTTGCGCAAACTCATCTTTTAACGTT 1359 Query 186 AAA 188 ||| Sbjct 1360 AAA 1362 >seq46228 Length=739 Score = 111 bits (122), Expect = 3e-22 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || |||||||||||||| | ||| | Sbjct 376 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTT 434 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| || ||| || |||| ||| | || Sbjct 435 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 494 Query 127 CTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||| || | || ||| |||||||||| ||||| ||| | | ||||||| | || | Sbjct 495 CTTTGTAGTCTTTTAAACTACCAACTACCATAATCTTGCGCAAACTCATCTTTTAACGTT 554 Query 186 AAA 188 ||| Sbjct 555 AAA 557 >seq19975 Length=892 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/97 (78%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78 |||| | |||||| ||| || |||||||||||||| | ||| ||||||||||||| Sbjct 98 TTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTA---AAAAGTTTGGGCCGTGTCTC 42 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 |||||||||||||| | ||| || ||| || |||| Sbjct 41 AGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997938140160