Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq26116 136 4e-30 seq3700 136 4e-30 seq1223 136 4e-30 seq45402 122 9e-26 seq1878 120 3e-25 >seq26116 Length=1118 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 600 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 541 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 540 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 483 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 482 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 424 >seq3700 Length=390 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 176 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 235 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 236 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 293 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 294 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 352 >seq1223 Length=273 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 232 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 173 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 172 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 115 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 114 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 56 >seq45402 Length=31084 Score = 122 bits (134), Expect = 9e-26 Identities = 137/179 (77%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC----TCGAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||| | |||||||||| || Sbjct 9432 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTTATTTGAATACATTAGCA 9491 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| || || | ||| ||||| Sbjct 9492 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGGTTGCA-CACC-AGGGTAAT 9549 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| | | ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 9550 GATTAATAGGAACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 9608 >seq1878 Length=308 Score = 120 bits (132), Expect = 3e-25 Identities = 131/170 (77%), Gaps = 7/170 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 127 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 186 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 187 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 244 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 ||| |||| ||| ||| |||||| | |||| | |||| |||||||| Sbjct 245 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAA 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511770550400